Click here to switch to the map view.

The map label for this gene is crtN [H]

Identifier: 18310541

GI number: 18310541

Start: 1827889

End: 1829388

Strand: Direct

Name: crtN [H]

Synonym: CPE1559

Alternate gene names: 18310541

Gene position: 1827889-1829388 (Clockwise)

Preceding gene: 18310540

Following gene: 18310554

Centisome position: 60.3

GC content: 25.87

Gene sequence:

>1500_bases
ATGAGTTCAAAGAAAAAAGCTATAATAGTTGGAGCTGGAATAGGTGGATTAGCTACTGCTGTTCGCCTTCTTGTTAATAA
TTTTGAAGTAGATATTTTTGAAAAAAACTCTAAGATAGGTGGAAAAGTAAATTTAATTGAATACAAAGATTTTAAGATAG
ATTCTTCTGCTTCAATATTTATGCTCCCTAAGCCCTATTTAGAAGTATTTAAATATGCAAAAAAAGACCCTAAAGACTAT
ATAGAACTTGTAGAATTAAATACTTTATATAAAGTGTTTAATGATGAAGGGGATAGTTTTAATATTTATTCAGACTTTCT
AAAAACTACAGAGTCCTTAGAAAAGGTATTTAATGATGAAAGTTCAAATTATTATAAATATATATCTGACTCCTATAGAA
GATATCTTTTAGTAGAAAAATACTTTTTAAACAGGAGTTTTTTCACCTTAAATTATTGGAGATATTTTAAATCTTTACCT
GAACTAATTAAAATACATCCTTTTAAAAATTGTTATAAAACCATTGAAGAATATATAAGTAATGAATATTTAAAAACCTT
ATTAGCTTTTCAATGCATGTATATTGGGGAGTCTCCCCTTAAAAGTTCTAATGTTTTTAATTTAATTCCATCAACCACTC
AAATATATGGATTATATTATATTAAAGGTGGAATGTACTCTTATGTGAAGGCTTTAGAAAAATTAATCCTAGAACTTGGC
GGAAAAATACATCTTAACTCAAATGTAACTAATATAATTATGGAAAAGAATGTAGCAATTGGAGCAAAAATAAACCACGA
AAATATATTTTCTGATTTAATTGTTTGTAATTCAGATTTTACTTATACCATACACAATTTACTTCCTAGAAGTACATTTA
AAAATAAAATTTCTAGGCGAAAACAAAATAATTTATCCTTTTCTTGCTCTACATTTATACTACATTTATTTCTTAAGAAA
AAATATAAAAATTTACATGTACATAATATAGTACTTAATTTAAATAAGAAAGAAGTTTTATTAGCTCCCTTTATAGATGG
GCCCTTGCCAAAGGAATATATATATTATATCTATTGCCCAAGCTCAATAGATACTTCATTAACTCCTCCGGATTGTGAAT
GCATTAATATAACAGTACGTGTTCCAAACTTAAAAAAATATAAGTCAAAATGGAATGAATTTACAATTGTTTCTTTGAAA
AATAAAATCTTATATGACCTAAGTAAAATTAAAGGTTTAGAAGATATAAAAGAAAATATAATTTACGAAAGCTATACAAC
ACCTATGACCTTAAAAAATGATTTTAATTGCTTTTTTGGTGCAGCTTTTGGTCTTAATCATAATTTGCTACAAACAACTA
TTTTTAGACCTCAGGCAAAAATAAAAAAACTAAAGAATATATATTTTGTAGGAGATTCAGTGCATCCTGGCTCTGGAATA
TCAATGTCTTTAACTTCAGCTAAGCTATGCTGTGAAAAAATAATATCGGATTTTAACTAA

Upstream 100 bases:

>100_bases
TACATAATTGATGATTTATGGCCTAATTTTAATAAAGATCATTTCTTTAATGCTCTTGAATGGTACAACGATCAAGATAT
TACCCTAGGCGGTTAATTAA

Downstream 100 bases:

>100_bases
ATAAAAAGAGGTGTATTATGATACATCTCTTTAAAAATCTTGTATTTCATTTATATTTTCCTTAACCACTTCACTAAAAA
TACAAACTATTTCTGGATCA

Product: diapophytoene dehydrogenase

Products: NA

Alternate protein names: 4,4'-diapophytoene desaturase; Diapophytoene desaturase [H]

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MSSKKKAIIVGAGIGGLATAVRLLVNNFEVDIFEKNSKIGGKVNLIEYKDFKIDSSASIFMLPKPYLEVFKYAKKDPKDY
IELVELNTLYKVFNDEGDSFNIYSDFLKTTESLEKVFNDESSNYYKYISDSYRRYLLVEKYFLNRSFFTLNYWRYFKSLP
ELIKIHPFKNCYKTIEEYISNEYLKTLLAFQCMYIGESPLKSSNVFNLIPSTTQIYGLYYIKGGMYSYVKALEKLILELG
GKIHLNSNVTNIIMEKNVAIGAKINHENIFSDLIVCNSDFTYTIHNLLPRSTFKNKISRRKQNNLSFSCSTFILHLFLKK
KYKNLHVHNIVLNLNKKEVLLAPFIDGPLPKEYIYYIYCPSSIDTSLTPPDCECINITVRVPNLKKYKSKWNEFTIVSLK
NKILYDLSKIKGLEDIKENIIYESYTTPMTLKNDFNCFFGAAFGLNHNLLQTTIFRPQAKIKKLKNIYFVGDSVHPGSGI
SMSLTSAKLCCEKIISDFN

Sequences:

>Translated_499_residues
MSSKKKAIIVGAGIGGLATAVRLLVNNFEVDIFEKNSKIGGKVNLIEYKDFKIDSSASIFMLPKPYLEVFKYAKKDPKDY
IELVELNTLYKVFNDEGDSFNIYSDFLKTTESLEKVFNDESSNYYKYISDSYRRYLLVEKYFLNRSFFTLNYWRYFKSLP
ELIKIHPFKNCYKTIEEYISNEYLKTLLAFQCMYIGESPLKSSNVFNLIPSTTQIYGLYYIKGGMYSYVKALEKLILELG
GKIHLNSNVTNIIMEKNVAIGAKINHENIFSDLIVCNSDFTYTIHNLLPRSTFKNKISRRKQNNLSFSCSTFILHLFLKK
KYKNLHVHNIVLNLNKKEVLLAPFIDGPLPKEYIYYIYCPSSIDTSLTPPDCECINITVRVPNLKKYKSKWNEFTIVSLK
NKILYDLSKIKGLEDIKENIIYESYTTPMTLKNDFNCFFGAAFGLNHNLLQTTIFRPQAKIKKLKNIYFVGDSVHPGSGI
SMSLTSAKLCCEKIISDFN
>Mature_498_residues
SSKKKAIIVGAGIGGLATAVRLLVNNFEVDIFEKNSKIGGKVNLIEYKDFKIDSSASIFMLPKPYLEVFKYAKKDPKDYI
ELVELNTLYKVFNDEGDSFNIYSDFLKTTESLEKVFNDESSNYYKYISDSYRRYLLVEKYFLNRSFFTLNYWRYFKSLPE
LIKIHPFKNCYKTIEEYISNEYLKTLLAFQCMYIGESPLKSSNVFNLIPSTTQIYGLYYIKGGMYSYVKALEKLILELGG
KIHLNSNVTNIIMEKNVAIGAKINHENIFSDLIVCNSDFTYTIHNLLPRSTFKNKISRRKQNNLSFSCSTFILHLFLKKK
YKNLHVHNIVLNLNKKEVLLAPFIDGPLPKEYIYYIYCPSSIDTSLTPPDCECINITVRVPNLKKYKSKWNEFTIVSLKN
KILYDLSKIKGLEDIKENIIYESYTTPMTLKNDFNCFFGAAFGLNHNLLQTTIFRPQAKIKKLKNIYFVGDSVHPGSGIS
MSLTSAKLCCEKIISDFN

Specific function: Catalyzes three successive dehydrogenation reactions that lead to the introduction of three double bonds into dehydrosqualene (4,4'-diapophytoene), with 4,4'-diapophytofluene and 4,4'-diapo-zeta-carotene as intermediates, and 4,4'- diaponeurosporene (the

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family. CrtN subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 57693; Mature: 57561

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKKKAIIVGAGIGGLATAVRLLVNNFEVDIFEKNSKIGGKVNLIEYKDFKIDSSASIF
CCCCCCEEEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEEEECEEECCCCEEE
MLPKPYLEVFKYAKKDPKDYIELVELNTLYKVFNDEGDSFNIYSDFLKTTESLEKVFNDE
ECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCC
SSNYYKYISDSYRRYLLVEKYFLNRSFFTLNYWRYFKSLPELIKIHPFKNCYKTIEEYIS
CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHEECCCHHHHHHHHHHHH
NEYLKTLLAFQCMYIGESPLKSSNVFNLIPSTTQIYGLYYIKGGMYSYVKALEKLILELG
HHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHHHHHCC
GKIHLNSNVTNIIMEKNVAIGAKINHENIFSDLIVCNSDFTYTIHNLLPRSTFKNKISRR
CEEEECCCCEEEEEECCEEEEEEECHHHHHHHHEEECCCCEEEHHHHCCHHHHHHHHHHH
KQNNLSFSCSTFILHLFLKKKYKNLHVHNIVLNLNKKEVLLAPFIDGPLPKEYIYYIYCP
HHCCCCEEHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCCCEEEEEEEC
SSIDTSLTPPDCECINITVRVPNLKKYKSKWNEFTIVSLKNKILYDLSKIKGLEDIKENI
CCCCCCCCCCCCEEEEEEEECCCHHHHHHCCCCEEEEEECHHHHHHHHHHCCHHHHHHHH
IYESYTTPMTLKNDFNCFFGAAFGLNHNLLQTTIFRPQAKIKKLKNIYFVGDSVHPGSGI
EEECCCCCEEECCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHHCEEEEEECCCCCCCCC
SMSLTSAKLCCEKIISDFN
EEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSKKKAIIVGAGIGGLATAVRLLVNNFEVDIFEKNSKIGGKVNLIEYKDFKIDSSASIF
CCCCCEEEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEEEECEEECCCCEEE
MLPKPYLEVFKYAKKDPKDYIELVELNTLYKVFNDEGDSFNIYSDFLKTTESLEKVFNDE
ECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCC
SSNYYKYISDSYRRYLLVEKYFLNRSFFTLNYWRYFKSLPELIKIHPFKNCYKTIEEYIS
CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHEECCCHHHHHHHHHHHH
NEYLKTLLAFQCMYIGESPLKSSNVFNLIPSTTQIYGLYYIKGGMYSYVKALEKLILELG
HHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHHHHHCC
GKIHLNSNVTNIIMEKNVAIGAKINHENIFSDLIVCNSDFTYTIHNLLPRSTFKNKISRR
CEEEECCCCEEEEEECCEEEEEEECHHHHHHHHEEECCCCEEEHHHHCCHHHHHHHHHHH
KQNNLSFSCSTFILHLFLKKKYKNLHVHNIVLNLNKKEVLLAPFIDGPLPKEYIYYIYCP
HHCCCCEEHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCCCEEEEEEEC
SSIDTSLTPPDCECINITVRVPNLKKYKSKWNEFTIVSLKNKILYDLSKIKGLEDIKENI
CCCCCCCCCCCCEEEEEEEECCCHHHHHHCCCCEEEEEECHHHHHHHHHHCCHHHHHHHH
IYESYTTPMTLKNDFNCFFGAAFGLNHNLLQTTIFRPQAKIKKLKNIYFVGDSVHPGSGI
EEECCCCCEEECCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHHCEEEEEECCCCCCCCC
SMSLTSAKLCCEKIISDFN
EEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA