| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310367
Identifier: 18310367
GI number: 18310367
Start: 1636222
End: 1636791
Strand: Reverse
Name: 18310367
Synonym: CPE1385
Alternate gene names: NA
Gene position: 1636791-1636222 (Counterclockwise)
Preceding gene: 18310368
Following gene: 18310365
Centisome position: 53.99
GC content: 33.33
Gene sequence:
>570_bases ATGTCAAAGCGTAGACGCAAAAATAAAGTTAGTGAAAATTCAAATCAAGGAAATTTTATGGGGGGATTAAATCCTCAGAT GTTAGATATGTTAGGACTTGGAGATGTTGATGTAAACAAAGTATCAGAAGTTCTATCTTCTATGGGCAGTGATGGATTCG ATATGAATTCTATAAATTCTATTTTAAATAACAAGGATGGAGGAAAGAATAATTCTTCTAAGAATAAAAGTAGTAAGAAA GGAAATATGAATAATAATAATCCTTTATCAGCTATTATGGGAGATGGAAACCCTATGGGGGATTTAAGCTCACTTATGGG ATTACTAGGTGGCGGAGCACAAGGAATGAATCCAATGGGTAATATGGGGAACTTAGGAGCTATTGCTAATATGATGGGTG GAAATATGGGAGGTGGAAATTTAGGAGCACCAAATAATGTAAGTGGTGATACAAGTATGGATCCAATAGTTACTATGATA CTTTCCCTTAGAAATTTTGTTGATCCTCAAAGAGCTAGATTTTTAGATAAGGTTTTAAAGATGTATAAGGAAGGAAAAAT AACTTATTAG
Upstream 100 bases:
>100_bases TATGAATGTTGTTAGAATAATTTTTGGAGGGTTTTTTAACCCTCCTAAAAAAATAAAAAATTATAGTACATATACATAAA TTTATTAAGGAGGATAGGAG
Downstream 100 bases:
>100_bases ATTTATATACTTAATTTAAAAAAGAGATTTATCAAAACTTGTATATGAAATTTATAAATATATTATGAGAAATTCTTAAC TTTGATCAAATTTTATTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MSKRRRKNKVSENSNQGNFMGGLNPQMLDMLGLGDVDVNKVSEVLSSMGSDGFDMNSINSILNNKDGGKNNSSKNKSSKK GNMNNNNPLSAIMGDGNPMGDLSSLMGLLGGGAQGMNPMGNMGNLGAIANMMGGNMGGGNLGAPNNVSGDTSMDPIVTMI LSLRNFVDPQRARFLDKVLKMYKEGKITY
Sequences:
>Translated_189_residues MSKRRRKNKVSENSNQGNFMGGLNPQMLDMLGLGDVDVNKVSEVLSSMGSDGFDMNSINSILNNKDGGKNNSSKNKSSKK GNMNNNNPLSAIMGDGNPMGDLSSLMGLLGGGAQGMNPMGNMGNLGAIANMMGGNMGGGNLGAPNNVSGDTSMDPIVTMI LSLRNFVDPQRARFLDKVLKMYKEGKITY >Mature_188_residues SKRRRKNKVSENSNQGNFMGGLNPQMLDMLGLGDVDVNKVSEVLSSMGSDGFDMNSINSILNNKDGGKNNSSKNKSSKKG NMNNNNPLSAIMGDGNPMGDLSSLMGLLGGGAQGMNPMGNMGNLGAIANMMGGNMGGGNLGAPNNVSGDTSMDPIVTMIL SLRNFVDPQRARFLDKVLKMYKEGKITY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19960; Mature: 19829
Theoretical pI: Translated: 10.21; Mature: 10.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 10.1 %Met (Translated Protein) 10.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 9.6 %Met (Mature Protein) 9.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRRRKNKVSENSNQGNFMGGLNPQMLDMLGLGDVDVNKVSEVLSSMGSDGFDMNSINS CCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHH ILNNKDGGKNNSSKNKSSKKGNMNNNNPLSAIMGDGNPMGDLSSLMGLLGGGAQGMNPMG HHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC NMGNLGAIANMMGGNMGGGNLGAPNNVSGDTSMDPIVTMILSLRNFVDPQRARFLDKVLK CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH MYKEGKITY HHHCCCCCC >Mature Secondary Structure SKRRRKNKVSENSNQGNFMGGLNPQMLDMLGLGDVDVNKVSEVLSSMGSDGFDMNSINS CCHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHH ILNNKDGGKNNSSKNKSSKKGNMNNNNPLSAIMGDGNPMGDLSSLMGLLGGGAQGMNPMG HHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC NMGNLGAIANMMGGNMGGGNLGAPNNVSGDTSMDPIVTMILSLRNFVDPQRARFLDKVLK CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH MYKEGKITY HHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA