| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is thiT [H]
Identifier: 18310354
GI number: 18310354
Start: 1623511
End: 1624206
Strand: Direct
Name: thiT [H]
Synonym: CPE1372
Alternate gene names: 18310354
Gene position: 1623511-1624206 (Clockwise)
Preceding gene: 18310353
Following gene: 18310355
Centisome position: 53.56
GC content: 29.17
Gene sequence:
>696_bases ATGATGTCATTTTCACAAATAATAAATGATTTTATTCAAAGTTTTTCATCAATTAATTTAGGAGGAAATTTTAAGGAGAT TGTAACTAATCCACTAACAATTCTCACTTTAATAGGAGTCCTAATAATATTAGTTTTACTTATAAAGGCTAAAGACATCA AATTTGATGCAAAAATGCTTACAACAATAGGAATTGCTTTAGCACTTACTGCTGTATTAAACATGCTAAAGATATATAAA TTTCCTCAAGGTGGAGGAATAACCTTAGGTAGTATGATTCCTATAATACTTATTGCTTATGCTTATGGTCCATTAGTTGG AATGCTTACAGGATTTTTATTTGGTATAATTTCCTTATTTATAGATCCATATATACTTCATCCTGTACAAGTATTATTTG ATTATCCTATACCATATATGGCTTTAGGGGTAGCAGGATTCTTTAAAAATCATAGAATTTCAGGAGCTGTAGTAGCAATA TTCTTAAAATTTTTAGCTCACTTTATTTCAGGAGTTGTTTTCTTCGGATCCTTTGCTCCTGAAGGAATGTCTCCAATTCT ATATTCATTTTTAGTAAATGGTTCTTTAATAGGAGCTGATGGCTTAATATGTGTAATACTTTTAGGTATTTTACCTGTTA ATAGACTTATTAAAGCCATAAGTTCTAAAAGCGTAACAAGCAAATACGCATCTTAA
Upstream 100 bases:
>100_bases GGCTGTATTTAACACCGGATCTATATTTAGATTCGGTTTTTTTATTTACATTCTTTAGACTCTCTAAGCACACTTAAAGT TTAAGGAGGGGGTAAAAACT
Downstream 100 bases:
>100_bases AATAAAGTAAGGTCTAGATTTCATTAAAATCTAGACCTTTTTATTTTTTAATTAAAGAATTATACTATAGATAAGAGATA AAAAGTTATATAAACTTAGG
Product: putative proton-coupled thiamine transporter YuaJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 231; Mature: 231
Protein sequence:
>231_residues MMSFSQIINDFIQSFSSINLGGNFKEIVTNPLTILTLIGVLIILVLLIKAKDIKFDAKMLTTIGIALALTAVLNMLKIYK FPQGGGITLGSMIPIILIAYAYGPLVGMLTGFLFGIISLFIDPYILHPVQVLFDYPIPYMALGVAGFFKNHRISGAVVAI FLKFLAHFISGVVFFGSFAPEGMSPILYSFLVNGSLIGADGLICVILLGILPVNRLIKAISSKSVTSKYAS
Sequences:
>Translated_231_residues MMSFSQIINDFIQSFSSINLGGNFKEIVTNPLTILTLIGVLIILVLLIKAKDIKFDAKMLTTIGIALALTAVLNMLKIYK FPQGGGITLGSMIPIILIAYAYGPLVGMLTGFLFGIISLFIDPYILHPVQVLFDYPIPYMALGVAGFFKNHRISGAVVAI FLKFLAHFISGVVFFGSFAPEGMSPILYSFLVNGSLIGADGLICVILLGILPVNRLIKAISSKSVTSKYAS >Mature_231_residues MMSFSQIINDFIQSFSSINLGGNFKEIVTNPLTILTLIGVLIILVLLIKAKDIKFDAKMLTTIGIALALTAVLNMLKIYK FPQGGGITLGSMIPIILIAYAYGPLVGMLTGFLFGIISLFIDPYILHPVQVLFDYPIPYMALGVAGFFKNHRISGAVVAI FLKFLAHFISGVVFFGSFAPEGMSPILYSFLVNGSLIGADGLICVILLGILPVNRLIKAISSKSVTSKYAS
Specific function: Probable proton-coupled thiamine transporter [H]
COG id: COG3859
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the proton-coupled thiamine transporter family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012651 [H]
Pfam domain/function: PF09515 Thia_YuaJ [H]
EC number: NA
Molecular weight: Translated: 24902; Mature: 24902
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSFSQIINDFIQSFSSINLGGNFKEIVTNPLTILTLIGVLIILVLLIKAKDIKFDAKML CCCHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH TTIGIALALTAVLNMLKIYKFPQGGGITLGSMIPIILIAYAYGPLVGMLTGFLFGIISLF HHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDPYILHPVQVLFDYPIPYMALGVAGFFKNHRISGAVVAIFLKFLAHFISGVVFFGSFAP HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC EGMSPILYSFLVNGSLIGADGLICVILLGILPVNRLIKAISSKSVTSKYAS CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MMSFSQIINDFIQSFSSINLGGNFKEIVTNPLTILTLIGVLIILVLLIKAKDIKFDAKML CCCHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH TTIGIALALTAVLNMLKIYKFPQGGGITLGSMIPIILIAYAYGPLVGMLTGFLFGIISLF HHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDPYILHPVQVLFDYPIPYMALGVAGFFKNHRISGAVVAIFLKFLAHFISGVVFFGSFAP HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC EGMSPILYSFLVNGSLIGADGLICVILLGILPVNRLIKAISSKSVTSKYAS CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]