| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is resE [H]
Identifier: 18310298
GI number: 18310298
Start: 1556909
End: 1559374
Strand: Reverse
Name: resE [H]
Synonym: CPE1316
Alternate gene names: 18310298
Gene position: 1559374-1556909 (Counterclockwise)
Preceding gene: 18310300
Following gene: 18310297
Centisome position: 51.44
GC content: 22.87
Gene sequence:
>2466_bases ATGAATAAATTTTTGAAAAAAGAGGTATTTTTACTTATTTTAAATATTTATTTAATATATAATAGAAGTACTATGCTAAA TAAGAATGGGGAAAATTTAGATATGTTAATTGGACTTTTTAACAATTTAGGTATTAAAGAGAAAACATTAAAAAGAATAG CAATAGTCACAGTAATATTACTTAGTTTATTTTTTATAAAAGGGTTAAATTTAATTTGTGCCTTAAATAGAGATTTGTTT AAGGATGTAAGTGTAGTTTATGCTGCTGAAGAAATTATAGTAATGACTCAAATAATTCTTTGTATTATGATATTATCTAT ATGCTTTATATATTATAGAGGACTTAAACGAAAAGAGTTCTTTAGTATATCACTTGTTTATGTAAGTATTATTACTGAAA TGATTTTTATAGTCTTAACAGGAAAAATAGTTGAAAATCAGGTTTATGACTTGAATTTATTTAGTTTGTTATTTAGAGGG ATATTACTACTTTTAGCTGTTTTATGCCTTGAAAATTTTGATGCTTTTATAAGGAAATATAAAAAATTAACCTTAGTATT TGTAATATTGGTAACGATTATATTACAAATATTAAATGTTAATTATAACATAGGAATATATACATATAATTTTATATATA ATTTAACTTTAGTTTTAATAGTTTTAACATATATATCTTGTATAATATTTTGTTTAGTTAGAATTTTTCAATTTAGAGAA ATAACTTATTTAGTAATAATGATAAGTGCTTCACTTATGTTATTAAAATTAGTTTATGGCCTTTCTTTAAGTATAACGAA TAATAATCTTATAAAAATAAATATTGTATTTTTTAATTTTATATCATTTATGAGCTTTGTATTTGGTATGTTTTTTGATT TACTTCAAGTTATAAAAAATAAAAATTTTATGCAAGAAGAATTAAGTGCATTTTTTAACCTAATAGAATTTGATTGTAAT AGTGAAGTTGTAGTACTTAGTAACAATTTAAAAGTTCTTTATGCAAATGAAAAATGTAGAAGTAAGAGAATATCACCTAA AAATAGAGAAAATAAAACTTATATTGATTTAGAAAAACAAATTAAAGGATTTTTATATGATAAAAATATAATTTGTATAG AAAGTGTGCTTAGAAATTCTAAGGAATGGAAAGGTATAATAAAGTTAAATGAAGAGGATGAAGTTGTAAAAGTAAATCTT CAGAGAATAAAAAAAGAAAAAAATCTTTATTATGTACTTAGAATTAATGATATAACAGAAGAATACAAAATGGAGAAAAA TTTAAAATTAGAGGAGCAAAGGCTTAGAGGAGTTACTGAAAATATAAAAGATTTAATATTTACAATTGATGTTGAAGGAA AAATAAGCTATGTAAACAAAGCAGTAATAGATGTTTTAGGATATAGCGAAGAAGAATTAATAGGAAAAAATTATTATGAT CTATTATTGGTTGAATCTAATTTAAATATAATAGACAGCAAATATTTTAATGAAGATAAGATTTTAACAATAGATAAGGT AAGATCTAAAAAAGGGTTGGTTCAATTAGAATCTATTTCTAGTAGAATTAAGGATAATAAAAATAATACCTTAGGATGGG TAAGAGTTGCTAGAAATATAGAGGATGTAAGAGAAATAGAAATATTAAAGAATAAATTTGAAGAAATAAAGCAATATGAC AAGGTTAGAAGTGAGTTTTTTGCAAATTTATCTCATGAGCTTAGAACTCCTATTAACATAATATATTCATGCATACAGCT TTTAAACACTAGTAAAAAGAATAAGGCAAACTTTGCTAATTTATATGATAAGTATGAAAAAACTTTAAAACAAAATTGTT TTAGAATGTTAAGGCTTGTAAATAATCTTATAGATATAACAAAAATAGACTCTGGTTTTATTAAGATGGACTTTATTAAT TATGACATAATAAAGCTTACAGAAGATATAACTATGTCTGTAATTCCTTATGTAGAATCTAAGAATATAGATATAATCTT TGATACTGATTATGAGGAATTAGAGATAAGGTGTGACCCAGATAAAATTGAGAGAATAATTTTAAATTTATTATCTAATG CCATAAAATTTACAGAGCCAGGTGGAAAAATAGAAGTTAGTATTTTTGCAGATGAAGCTTGGGTAGATATAAGGGTTAAG GATACAGGTATAGGAATTCCATCACACATGAAAGAATTTATTTTTGAAAGATTTATACAAAATGATAAATCCTTAAATAG AAATAAAGAAGGAAGTGGAATAGGATTATCCTTAGTTAAATCTTTAGTGGAATTACATGAAGGAAAAGTTTTCTTAAGAG AAAGTAATGAATCAGGTAGTGAATTTTCAATATTACTACCTAATGTGAAATTGGAGAATGATGTTTGCGAAAATGGAAGC TTAGATTATAAAACAGAGGTTGAAAAAATATCAATAGAGTTTGCTGATATTTATGAAATATATTAG
Upstream 100 bases:
>100_bases TTTAATCCTCCTATTAAATTGTTGAAATTTTTATAATAACATTTTAGATGTTAAAAATAAATAGGTCAATATTAATAATA TATAGTAATTTTATGAAGAA
Downstream 100 bases:
>100_bases GAGATTTAATAAGTTTAAATGATTTCATAAACTTTCTATTTTAAAAAGATAATGATATAATATTAAGGGCTTGTTTAAAA AAGACAAGTCCTTAATTATT
Product: two-component sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 821; Mature: 821
Protein sequence:
>821_residues MNKFLKKEVFLLILNIYLIYNRSTMLNKNGENLDMLIGLFNNLGIKEKTLKRIAIVTVILLSLFFIKGLNLICALNRDLF KDVSVVYAAEEIIVMTQIILCIMILSICFIYYRGLKRKEFFSISLVYVSIITEMIFIVLTGKIVENQVYDLNLFSLLFRG ILLLLAVLCLENFDAFIRKYKKLTLVFVILVTIILQILNVNYNIGIYTYNFIYNLTLVLIVLTYISCIIFCLVRIFQFRE ITYLVIMISASLMLLKLVYGLSLSITNNNLIKINIVFFNFISFMSFVFGMFFDLLQVIKNKNFMQEELSAFFNLIEFDCN SEVVVLSNNLKVLYANEKCRSKRISPKNRENKTYIDLEKQIKGFLYDKNIICIESVLRNSKEWKGIIKLNEEDEVVKVNL QRIKKEKNLYYVLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYD LLLVESNLNIIDSKYFNEDKILTIDKVRSKKGLVQLESISSRIKDNKNNTLGWVRVARNIEDVREIEILKNKFEEIKQYD KVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFIN YDIIKLTEDITMSVIPYVESKNIDIIFDTDYEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADEAWVDIRVK DTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNESGSEFSILLPNVKLENDVCENGS LDYKTEVEKISIEFADIYEIY
Sequences:
>Translated_821_residues MNKFLKKEVFLLILNIYLIYNRSTMLNKNGENLDMLIGLFNNLGIKEKTLKRIAIVTVILLSLFFIKGLNLICALNRDLF KDVSVVYAAEEIIVMTQIILCIMILSICFIYYRGLKRKEFFSISLVYVSIITEMIFIVLTGKIVENQVYDLNLFSLLFRG ILLLLAVLCLENFDAFIRKYKKLTLVFVILVTIILQILNVNYNIGIYTYNFIYNLTLVLIVLTYISCIIFCLVRIFQFRE ITYLVIMISASLMLLKLVYGLSLSITNNNLIKINIVFFNFISFMSFVFGMFFDLLQVIKNKNFMQEELSAFFNLIEFDCN SEVVVLSNNLKVLYANEKCRSKRISPKNRENKTYIDLEKQIKGFLYDKNIICIESVLRNSKEWKGIIKLNEEDEVVKVNL QRIKKEKNLYYVLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYD LLLVESNLNIIDSKYFNEDKILTIDKVRSKKGLVQLESISSRIKDNKNNTLGWVRVARNIEDVREIEILKNKFEEIKQYD KVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFIN YDIIKLTEDITMSVIPYVESKNIDIIFDTDYEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADEAWVDIRVK DTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNESGSEFSILLPNVKLENDVCENGS LDYKTEVEKISIEFADIYEIY >Mature_821_residues MNKFLKKEVFLLILNIYLIYNRSTMLNKNGENLDMLIGLFNNLGIKEKTLKRIAIVTVILLSLFFIKGLNLICALNRDLF KDVSVVYAAEEIIVMTQIILCIMILSICFIYYRGLKRKEFFSISLVYVSIITEMIFIVLTGKIVENQVYDLNLFSLLFRG ILLLLAVLCLENFDAFIRKYKKLTLVFVILVTIILQILNVNYNIGIYTYNFIYNLTLVLIVLTYISCIIFCLVRIFQFRE ITYLVIMISASLMLLKLVYGLSLSITNNNLIKINIVFFNFISFMSFVFGMFFDLLQVIKNKNFMQEELSAFFNLIEFDCN SEVVVLSNNLKVLYANEKCRSKRISPKNRENKTYIDLEKQIKGFLYDKNIICIESVLRNSKEWKGIIKLNEEDEVVKVNL QRIKKEKNLYYVLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYD LLLVESNLNIIDSKYFNEDKILTIDKVRSKKGLVQLESISSRIKDNKNNTLGWVRVARNIEDVREIEILKNKFEEIKQYD KVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFIN YDIIKLTEDITMSVIPYVESKNIDIIFDTDYEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADEAWVDIRVK DTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNESGSEFSILLPNVKLENDVCENGS LDYKTEVEKISIEFADIYEIY
Specific function: Member of the two-component regulatory system resD/resE involved in the global regulation of aerobic and anaerobic respiration. Probably phosphorylates resD [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI145693157, Length=242, Percent_Identity=29.7520661157025, Blast_Score=121, Evalue=1e-28, Organism=Escherichia coli, GI1789149, Length=250, Percent_Identity=26.4, Blast_Score=108, Evalue=9e-25, Organism=Escherichia coli, GI1786600, Length=361, Percent_Identity=25.4847645429363, Blast_Score=108, Evalue=2e-24, Organism=Escherichia coli, GI1788713, Length=305, Percent_Identity=29.1803278688525, Blast_Score=106, Evalue=7e-24, Organism=Escherichia coli, GI1786912, Length=234, Percent_Identity=26.0683760683761, Blast_Score=97, Evalue=4e-21, Organism=Escherichia coli, GI48994928, Length=386, Percent_Identity=24.3523316062176, Blast_Score=94, Evalue=4e-20, Organism=Escherichia coli, GI1788393, Length=266, Percent_Identity=24.4360902255639, Blast_Score=93, Evalue=7e-20, Organism=Escherichia coli, GI1786783, Length=288, Percent_Identity=29.5138888888889, Blast_Score=91, Evalue=4e-19, Organism=Escherichia coli, GI87081816, Length=242, Percent_Identity=27.2727272727273, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1788549, Length=351, Percent_Identity=20.5128205128205, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1790300, Length=369, Percent_Identity=24.1192411924119, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1790436, Length=240, Percent_Identity=25.8333333333333, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1790861, Length=224, Percent_Identity=29.0178571428571, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1788279, Length=287, Percent_Identity=26.4808362369338, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI87082128, Length=246, Percent_Identity=25.2032520325203, Blast_Score=69, Evalue=8e-13, Organism=Escherichia coli, GI1790551, Length=219, Percent_Identity=23.2876712328767, Blast_Score=69, Evalue=9e-13, Organism=Escherichia coli, GI1787894, Length=222, Percent_Identity=24.7747747747748, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1790346, Length=236, Percent_Identity=22.4576271186441, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 95818; Mature: 95818
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: PS50112 PAS ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKFLKKEVFLLILNIYLIYNRSTMLNKNGENLDMLIGLFNNLGIKEKTLKRIAIVTVIL CCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH LSLFFIKGLNLICALNRDLFKDVSVVYAAEEIIVMTQIILCIMILSICFIYYRGLKRKEF HHHHHHCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH FSISLVYVSIITEMIFIVLTGKIVENQVYDLNLFSLLFRGILLLLAVLCLENFDAFIRKY HHHHHHHHHHHHHHHHHHHHCHHHHCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKLTLVFVILVTIILQILNVNYNIGIYTYNFIYNLTLVLIVLTYISCIIFCLVRIFQFRE HHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITYLVIMISASLMLLKLVYGLSLSITNNNLIKINIVFFNFISFMSFVFGMFFDLLQVIKN HHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHC KNFMQEELSAFFNLIEFDCNSEVVVLSNNLKVLYANEKCRSKRISPKNRENKTYIDLEKQ CCHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEECCHHHHCCCCCCCCCCCEEEEHHHH IKGFLYDKNIICIESVLRNSKEWKGIIKLNEEDEVVKVNLQRIKKEKNLYYVLRINDITE HHHHHCCCCHHHHHHHHCCCCCCCEEEEECCCCCCEEHHHHHHHHCCCEEEEEEECCCHH EYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYD HHHHHCCCCHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCCHHHHCCCCCEE LLLVESNLNIIDSKYFNEDKILTIDKVRSKKGLVQLESISSRIKDNKNNTLGWVRVARNI EEEEECCCCEEECCCCCCCCEEEHHHHHCCCCCEEHHHHHHHHCCCCCCCHHHHHHHHCH EDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANFAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHH LYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYVES HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCEEEECCEEC KNIDIIFDTDYEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADEAWVDIRVK CCEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHEECCCCCEEEEEEEECCEEEEEEEE DTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNESGS CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCC EFSILLPNVKLENDVCENGSLDYKTEVEKISIEFADIYEIY EEEEEECCCEECCCCCCCCCCCCEECHHHEEEEEHHHEECC >Mature Secondary Structure MNKFLKKEVFLLILNIYLIYNRSTMLNKNGENLDMLIGLFNNLGIKEKTLKRIAIVTVIL CCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH LSLFFIKGLNLICALNRDLFKDVSVVYAAEEIIVMTQIILCIMILSICFIYYRGLKRKEF HHHHHHCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH FSISLVYVSIITEMIFIVLTGKIVENQVYDLNLFSLLFRGILLLLAVLCLENFDAFIRKY HHHHHHHHHHHHHHHHHHHHCHHHHCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKLTLVFVILVTIILQILNVNYNIGIYTYNFIYNLTLVLIVLTYISCIIFCLVRIFQFRE HHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITYLVIMISASLMLLKLVYGLSLSITNNNLIKINIVFFNFISFMSFVFGMFFDLLQVIKN HHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHC KNFMQEELSAFFNLIEFDCNSEVVVLSNNLKVLYANEKCRSKRISPKNRENKTYIDLEKQ CCHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEECCHHHHCCCCCCCCCCCEEEEHHHH IKGFLYDKNIICIESVLRNSKEWKGIIKLNEEDEVVKVNLQRIKKEKNLYYVLRINDITE HHHHHCCCCHHHHHHHHCCCCCCCEEEEECCCCCCEEHHHHHHHHCCCEEEEEEECCCHH EYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYD HHHHHCCCCHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCCHHHHCCCCCEE LLLVESNLNIIDSKYFNEDKILTIDKVRSKKGLVQLESISSRIKDNKNNTLGWVRVARNI EEEEECCCCEEECCCCCCCCEEEHHHHHCCCCCEEHHHHHHHHCCCCCCCHHHHHHHHCH EDVREIEILKNKFEEIKQYDKVRSEFFANLSHELRTPINIIYSCIQLLNTSKKNKANFAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHH LYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINYDIIKLTEDITMSVIPYVES HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCEEEECCEEC KNIDIIFDTDYEELEIRCDPDKIERIILNLLSNAIKFTEPGGKIEVSIFADEAWVDIRVK CCEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHEECCCCCEEEEEEEECCEEEEEEEE DTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVKSLVELHEGKVFLRESNESGS CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCC EFSILLPNVKLENDVCENGSLDYKTEVEKISIEFADIYEIY EEEEEECCCEECCCCCCCCCCCCEECHHHEEEEEHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934829; 9384377; 8631715 [H]