Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is pgm [H]

Identifier: 18310283

GI number: 18310283

Start: 1539718

End: 1541256

Strand: Reverse

Name: pgm [H]

Synonym: CPE1301

Alternate gene names: 18310283

Gene position: 1541256-1539718 (Counterclockwise)

Preceding gene: 18310284

Following gene: 18310282

Centisome position: 50.84

GC content: 33.72

Gene sequence:

>1539_bases
ATGAGTAAAAAACCTGTAATGTTAATGATATTAGACGGATTTGGAATTTCTCCAAACAAAGAAGGTAATGCAGTAGCTGC
TGCTAATAAACCAAATTATGATAGATTATTTAATAAATATCCACACACTGAATTACAAGCTTCAGGATTAGAAGTTGGTC
TTCCAGAAGGACAAATGGGTAACTCAGAAGTTGGTCATTTAAATATAGGTGCTGGTAGAATAATATACCAAGAGTTAACT
AGAATAACTAAAGAAATAAAAGAAGGAACTTTCTTCACAAACAAAGCTTTAGTTAAGGCTATGGATGAAGCTAAAGAAAA
TAATACTTCATTACACTTAATGGGATTATTATCAAACGGAGGGGTTCACTCTCACATAGATCACTTAAAAGGTCTTTTAG
AGTTAGCTAAGAAAAAAGGACTTCAAAAAGTTTACGTTCATGCTTTCATGGATGGTAGAGACGTTGCTCCATCATCAGGT
AAAGACTTCATAGTTGAATTAGAAAATGCTATGAAGGAAATTGGTGTTGGTGAAATAGCTACTATAAGTGGTAGATATTA
TGCAATGGACAGAGATAACAGATGGGAAAGAGTAGAATTAGCTTATAACGCTATGGCTTTAGGAGAAGGTGAAAAAGCTT
CTTCAGCTGTTGAAGCTATAGAAAAATCTTACCATGATAACAAAACTGACGAGTTCGTTTTACCTACAGTAATTGAAGAA
GATGGACACCCAGTTGCTAGAATTAAAGATGGAGATTCAGTAATATTCTTCAACTTTAGACCAGATAGAGCTAGAGAAAT
AACTAGAGCTATAGTTGATCCAGAATTTAAGGGCTTTGAAAGAAAGCAATTACACGTAAACTTTGTTTGTATGACTCAAT
ATGACAAAACTTTAGAGTGTGTAGATGTTGCTTACAGACCAGAAAGTTACACAAATACTTTAGGAGAATATGTTGCATCT
AAAGGATTAAACCAATTAAGAATTGCTGAAACTGAAAAATATGCTCACGTAACATTCTTCTTTAACGGTGGAGTAGAACA
ACCAAACACTAATGAAGATAGAGCATTAATAGCTTCACCAAAGGTTGCTACATACGATCTTAAACCAGAAATGAGTGCTT
ATGAAGTAACTGATGAATTAATAAATAGATTAGATCAAGACAAATATGACATGATAATATTAAACTTCGCTAACCCAGAT
ATGGTTGGACACACTGGAGTACAAGAAGCAGCTGTTAAAGCTATAGAAGCTGTTGATGAGTGCTTAGGTAAAGTAGCTGA
TAAAGTATTAGAAAAAGAAGGTACTTTATTCATAACTGCTGACCATGGTAATGCAGAAGTAATGATAGATTACTCAACTG
GTAAACCAATGACTGCTCATACTTCAGATCCAGTTCCATTCTTATGGGTATCAAAAGATGCTGAAGGAAAATCATTAAAA
GATGGTGGAAAATTAGCTGATATAGCTCCAACTATGTTAACTGTTATGGGATTAGAAGTTCCATCAGAAATGACTGGAAC
ATGTCTTTTAAACAAATAA

Upstream 100 bases:

>100_bases
CAATAGGCAAGTAATACCAATTGTCTATTGCTATTGTTTTTTAATTAGGTACACATTATAATAAATGTATAAATAGAAAT
TTAGTTTTTGGAGGGTTATT

Downstream 100 bases:

>100_bases
TATAAGTTAGTTATATATTTAAAATAGTATTCTTCTTCATGAAGGATACTATTTTTTTTTATAATAAAATAAGTTTTTAG
CTTGTGATTTTCTCATATAG

Product: phosphoglyceromutase

Products: NA

Alternate protein names: BPG-independent PGAM; Phosphoglyceromutase; iPGM [H]

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MSKKPVMLMILDGFGISPNKEGNAVAAANKPNYDRLFNKYPHTELQASGLEVGLPEGQMGNSEVGHLNIGAGRIIYQELT
RITKEIKEGTFFTNKALVKAMDEAKENNTSLHLMGLLSNGGVHSHIDHLKGLLELAKKKGLQKVYVHAFMDGRDVAPSSG
KDFIVELENAMKEIGVGEIATISGRYYAMDRDNRWERVELAYNAMALGEGEKASSAVEAIEKSYHDNKTDEFVLPTVIEE
DGHPVARIKDGDSVIFFNFRPDRAREITRAIVDPEFKGFERKQLHVNFVCMTQYDKTLECVDVAYRPESYTNTLGEYVAS
KGLNQLRIAETEKYAHVTFFFNGGVEQPNTNEDRALIASPKVATYDLKPEMSAYEVTDELINRLDQDKYDMIILNFANPD
MVGHTGVQEAAVKAIEAVDECLGKVADKVLEKEGTLFITADHGNAEVMIDYSTGKPMTAHTSDPVPFLWVSKDAEGKSLK
DGGKLADIAPTMLTVMGLEVPSEMTGTCLLNK

Sequences:

>Translated_512_residues
MSKKPVMLMILDGFGISPNKEGNAVAAANKPNYDRLFNKYPHTELQASGLEVGLPEGQMGNSEVGHLNIGAGRIIYQELT
RITKEIKEGTFFTNKALVKAMDEAKENNTSLHLMGLLSNGGVHSHIDHLKGLLELAKKKGLQKVYVHAFMDGRDVAPSSG
KDFIVELENAMKEIGVGEIATISGRYYAMDRDNRWERVELAYNAMALGEGEKASSAVEAIEKSYHDNKTDEFVLPTVIEE
DGHPVARIKDGDSVIFFNFRPDRAREITRAIVDPEFKGFERKQLHVNFVCMTQYDKTLECVDVAYRPESYTNTLGEYVAS
KGLNQLRIAETEKYAHVTFFFNGGVEQPNTNEDRALIASPKVATYDLKPEMSAYEVTDELINRLDQDKYDMIILNFANPD
MVGHTGVQEAAVKAIEAVDECLGKVADKVLEKEGTLFITADHGNAEVMIDYSTGKPMTAHTSDPVPFLWVSKDAEGKSLK
DGGKLADIAPTMLTVMGLEVPSEMTGTCLLNK
>Mature_511_residues
SKKPVMLMILDGFGISPNKEGNAVAAANKPNYDRLFNKYPHTELQASGLEVGLPEGQMGNSEVGHLNIGAGRIIYQELTR
ITKEIKEGTFFTNKALVKAMDEAKENNTSLHLMGLLSNGGVHSHIDHLKGLLELAKKKGLQKVYVHAFMDGRDVAPSSGK
DFIVELENAMKEIGVGEIATISGRYYAMDRDNRWERVELAYNAMALGEGEKASSAVEAIEKSYHDNKTDEFVLPTVIEED
GHPVARIKDGDSVIFFNFRPDRAREITRAIVDPEFKGFERKQLHVNFVCMTQYDKTLECVDVAYRPESYTNTLGEYVASK
GLNQLRIAETEKYAHVTFFFNGGVEQPNTNEDRALIASPKVATYDLKPEMSAYEVTDELINRLDQDKYDMIILNFANPDM
VGHTGVQEAAVKAIEAVDECLGKVADKVLEKEGTLFITADHGNAEVMIDYSTGKPMTAHTSDPVPFLWVSKDAEGKSLKD
GGKLADIAPTMLTVMGLEVPSEMTGTCLLNK

Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]

COG id: COG0696

COG function: function code G; Phosphoglyceromutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BPG-independent phosphoglycerate mutase family [H]

Homologues:

Organism=Escherichia coli, GI1790041, Length=512, Percent_Identity=54.6875, Blast_Score=565, Evalue=1e-162,
Organism=Caenorhabditis elegans, GI17507741, Length=517, Percent_Identity=46.615087040619, Blast_Score=445, Evalue=1e-125,
Organism=Caenorhabditis elegans, GI32564249, Length=517, Percent_Identity=46.615087040619, Blast_Score=444, Evalue=1e-125,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR011258
- InterPro:   IPR006124
- InterPro:   IPR005995 [H]

Pfam domain/function: PF06415 iPGM_N; PF01676 Metalloenzyme [H]

EC number: =5.4.2.1 [H]

Molecular weight: Translated: 56615; Mature: 56484

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKPVMLMILDGFGISPNKEGNAVAAANKPNYDRLFNKYPHTELQASGLEVGLPEGQMG
CCCCCEEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCEECCCCEEECCCCCCC
NSEVGHLNIGAGRIIYQELTRITKEIKEGTFFTNKALVKAMDEAKENNTSLHLMGLLSNG
CCCCCEEECCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHCCCCEEEEEEEECCC
GVHSHIDHLKGLLELAKKKGLQKVYVHAFMDGRDVAPSSGKDFIVELENAMKEIGVGEIA
CHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEHHHHHHHCCCCCEE
TISGRYYAMDRDNRWERVELAYNAMALGEGEKASSAVEAIEKSYHDNKTDEFVLPTVIEE
EECCEEEEECCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECEEECC
DGHPVARIKDGDSVIFFNFRPDRAREITRAIVDPEFKGFERKQLHVNFVCMTQYDKTLEC
CCCCEEEEECCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCEEE
VDVAYRPESYTNTLGEYVASKGLNQLRIAETEKYAHVTFFFNGGVEQPNTNEDRALIASP
EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEECC
KVATYDLKPEMSAYEVTDELINRLDQDKYDMIILNFANPDMVGHTGVQEAAVKAIEAVDE
CEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
CLGKVADKVLEKEGTLFITADHGNAEVMIDYSTGKPMTAHTSDPVPFLWVSKDAEGKSLK
HHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCCCEEECCCCCCEEEEEECCCCCCCCC
DGGKLADIAPTMLTVMGLEVPSEMTGTCLLNK
CCCCCHHHHHHHHHHHCCCCCCCCCCEEEECC
>Mature Secondary Structure 
SKKPVMLMILDGFGISPNKEGNAVAAANKPNYDRLFNKYPHTELQASGLEVGLPEGQMG
CCCCEEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCEECCCCEEECCCCCCC
NSEVGHLNIGAGRIIYQELTRITKEIKEGTFFTNKALVKAMDEAKENNTSLHLMGLLSNG
CCCCCEEECCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHCCCCEEEEEEEECCC
GVHSHIDHLKGLLELAKKKGLQKVYVHAFMDGRDVAPSSGKDFIVELENAMKEIGVGEIA
CHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEHHHHHHHCCCCCEE
TISGRYYAMDRDNRWERVELAYNAMALGEGEKASSAVEAIEKSYHDNKTDEFVLPTVIEE
EECCEEEEECCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECEEECC
DGHPVARIKDGDSVIFFNFRPDRAREITRAIVDPEFKGFERKQLHVNFVCMTQYDKTLEC
CCCCEEEEECCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCEEE
VDVAYRPESYTNTLGEYVASKGLNQLRIAETEKYAHVTFFFNGGVEQPNTNEDRALIASP
EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEECC
KVATYDLKPEMSAYEVTDELINRLDQDKYDMIILNFANPDMVGHTGVQEAAVKAIEAVDE
CEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
CLGKVADKVLEKEGTLFITADHGNAEVMIDYSTGKPMTAHTSDPVPFLWVSKDAEGKSLK
HHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCCCEEECCCCCCEEEEEECCCCCCCCC
DGGKLADIAPTMLTVMGLEVPSEMTGTCLLNK
CCCCCHHHHHHHHHHHCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA