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The map label for this gene is smpB

Identifier: 18310277

GI number: 18310277

Start: 1529901

End: 1530371

Strand: Reverse

Name: smpB

Synonym: CPE1295

Alternate gene names: 18310277

Gene position: 1530371-1529901 (Counterclockwise)

Preceding gene: 18310278

Following gene: 18310276

Centisome position: 50.48

GC content: 31.0

Gene sequence:

>471_bases
ATGGCAAAGAGAAAAGACAATAAGACATTAGCAGAGAATAGGAAAGCTAGACATGATTACTTTGTTGATGAAGCTATGGA
AGCAGGTATAGCTTTAGTTGGAACAGAGGTTAAGTCTATTAGAAACGGAAGAGTTAACTTAAAGGATTGTTATGCAGATA
TAAATAATGGAGAGATATTTATAAATAATATGCATATAAGTCCTTATGAGCAAGGAAACATATTTAATGTTGATCCTTTA
AGAAAAAGAAAATTACTTCTTCATAAAAGTGAAATTCAAAGATTAATAGGAATAGTTCAACAACAAGGGGTTGCTTTAAT
ACCACTTTCTTTATATTTAAAGAATGGAAGAGTTAAGGTTAACTTAGGGGTTTGTAGAGGTAAGAAAAACTACGACAAGA
GAGATACAATGCTTGAAAAGGCTCATAAGAGAGAGATGGATAGACAACTTAAGGAAAGAAATAGATATTAG

Upstream 100 bases:

>100_bases
TAGTAAATATGTTAAAATAATAAGCAAAGAAAAGAAATAAGAGGCGTTTTGCTTTGGGTAAGTAAAATTGCTTTTAATAT
AACCATAGTAGGTGAGAAGT

Downstream 100 bases:

>100_bases
GTTCTTTTCTAGAAGGTACTTAGAAGAAAAAGTTATTATTTTAATTTTAAAACTTTATCTTTTAAGTACCTTTTTTATAT
TTAAATGAAGGCACTTTTGC

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MAKRKDNKTLAENRKARHDYFVDEAMEAGIALVGTEVKSIRNGRVNLKDCYADINNGEIFINNMHISPYEQGNIFNVDPL
RKRKLLLHKSEIQRLIGIVQQQGVALIPLSLYLKNGRVKVNLGVCRGKKNYDKRDTMLEKAHKREMDRQLKERNRY

Sequences:

>Translated_156_residues
MAKRKDNKTLAENRKARHDYFVDEAMEAGIALVGTEVKSIRNGRVNLKDCYADINNGEIFINNMHISPYEQGNIFNVDPL
RKRKLLLHKSEIQRLIGIVQQQGVALIPLSLYLKNGRVKVNLGVCRGKKNYDKRDTMLEKAHKREMDRQLKERNRY
>Mature_155_residues
AKRKDNKTLAENRKARHDYFVDEAMEAGIALVGTEVKSIRNGRVNLKDCYADINNGEIFINNMHISPYEQGNIFNVDPLR
KRKLLLHKSEIQRLIGIVQQQGVALIPLSLYLKNGRVKVNLGVCRGKKNYDKRDTMLEKAHKREMDRQLKERNRY

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=160, Percent_Identity=41.875, Blast_Score=126, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_CLOP1 (Q0TQZ6)

Other databases:

- EMBL:   CP000246
- RefSeq:   YP_695944.1
- ProteinModelPortal:   Q0TQZ6
- SMR:   Q0TQZ6
- STRING:   Q0TQZ6
- GeneID:   4203890
- GenomeReviews:   CP000246_GR
- KEGG:   cpf:CPF_1501
- TIGR:   CPF_1501
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   CPER195103:CPF_1501-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18151; Mature: 18020

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRKDNKTLAENRKARHDYFVDEAMEAGIALVGTEVKSIRNGRVNLKDCYADINNGEIF
CCCCCCCCHHHHCCHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCCHHHHEEECCCCEEE
INNMHISPYEQGNIFNVDPLRKRKLLLHKSEIQRLIGIVQQQGVALIPLSLYLKNGRVKV
EEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEE
NLGVCRGKKNYDKRDTMLEKAHKREMDRQLKERNRY
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKRKDNKTLAENRKARHDYFVDEAMEAGIALVGTEVKSIRNGRVNLKDCYADINNGEIF
CCCCCCCHHHHCCHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCCHHHHEEECCCCEEE
INNMHISPYEQGNIFNVDPLRKRKLLLHKSEIQRLIGIVQQQGVALIPLSLYLKNGRVKV
EEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEE
NLGVCRGKKNYDKRDTMLEKAHKREMDRQLKERNRY
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA