Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18310276

Identifier: 18310276

GI number: 18310276

Start: 1528817

End: 1529425

Strand: Reverse

Name: 18310276

Synonym: CPE1294

Alternate gene names: NA

Gene position: 1529425-1528817 (Counterclockwise)

Preceding gene: 18310277

Following gene: 18310274

Centisome position: 50.45

GC content: 29.39

Gene sequence:

>609_bases
ATGAGAATTTTAAAAGGGGTAATTTTAGCTATAATTCCAGTATTCTTATTTATGGGATGTGGAGACTTTTCTAAAAAGGA
TGTTGCAAAGATAAGTTTTGAGCCGTTTTCAGAAAAAGAGGAGCAGATTTTAAATTTGACTGAAAATAGAGTTTTTTTCT
ATAAGGTGAAAAACATTTCTAAAGGTAAGGGATATAAGATTGATTTAAATTATGAGGTTTATAAAGAGGGGAAAGAAGTT
AAAAATGAACCTATTTTAACAAGTGTAAGTGAAATCTATGAAAAGGGGAAAGAGAATATAACCTTAGGAATAAACTTTAA
AGATGATAATAGGATAAATTGTCTTTTAGGAGGAGATGGAGCTTATAGTCGTCATAATTACAAGGCTGAAGAAAATATAA
AGGACTATTTTAGTGCTAATTTTGCTGGTGATTATGATTTAGAGCTTGAAAAAGGAAAGAGGCTTTGTCTTTATTATGCA
ACTTCAGGAAATGGAATTAGTAGTAATGTTATAGGAATGAACATGGATTCAGAGGAAATAAAAGAAGCTATTAATAAAAG
CAAAGACTGTATTTTCTTAAGTATAAGTGTAGAGGATTATAGTGAGTAG

Upstream 100 bases:

>100_bases
ACTAGTTTAGGATTTTATCATATAATATAAAAAATAGTTGCAATTAATATAAATAGGGATTTGCAAATTATAATATAAAA
TTTAATATAGGGGTGTTTTA

Downstream 100 bases:

>100_bases
TTTATAAATTTATTTTAGAGATTAAAATAAATCTAAAAGAGTAAATGTTCCTTATAAAAGTTAGTAGTTTATAAATAGAA
TTTAGAGCCTTAATAAAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MRILKGVILAIIPVFLFMGCGDFSKKDVAKISFEPFSEKEEQILNLTENRVFFYKVKNISKGKGYKIDLNYEVYKEGKEV
KNEPILTSVSEIYEKGKENITLGINFKDDNRINCLLGGDGAYSRHNYKAEENIKDYFSANFAGDYDLELEKGKRLCLYYA
TSGNGISSNVIGMNMDSEEIKEAINKSKDCIFLSISVEDYSE

Sequences:

>Translated_202_residues
MRILKGVILAIIPVFLFMGCGDFSKKDVAKISFEPFSEKEEQILNLTENRVFFYKVKNISKGKGYKIDLNYEVYKEGKEV
KNEPILTSVSEIYEKGKENITLGINFKDDNRINCLLGGDGAYSRHNYKAEENIKDYFSANFAGDYDLELEKGKRLCLYYA
TSGNGISSNVIGMNMDSEEIKEAINKSKDCIFLSISVEDYSE
>Mature_202_residues
MRILKGVILAIIPVFLFMGCGDFSKKDVAKISFEPFSEKEEQILNLTENRVFFYKVKNISKGKGYKIDLNYEVYKEGKEV
KNEPILTSVSEIYEKGKENITLGINFKDDNRINCLLGGDGAYSRHNYKAEENIKDYFSANFAGDYDLELEKGKRLCLYYA
TSGNGISSNVIGMNMDSEEIKEAINKSKDCIFLSISVEDYSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22967; Mature: 22967

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILKGVILAIIPVFLFMGCGDFSKKDVAKISFEPFSEKEEQILNLTENRVFFYKVKNIS
CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCC
KGKGYKIDLNYEVYKEGKEVKNEPILTSVSEIYEKGKENITLGINFKDDNRINCLLGGDG
CCCCEEEEECHHHHHCCHHCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCC
AYSRHNYKAEENIKDYFSANFAGDYDLELEKGKRLCLYYATSGNGISSNVIGMNMDSEEI
CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCEEECCCCHHHH
KEAINKSKDCIFLSISVEDYSE
HHHHCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MRILKGVILAIIPVFLFMGCGDFSKKDVAKISFEPFSEKEEQILNLTENRVFFYKVKNIS
CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCC
KGKGYKIDLNYEVYKEGKEVKNEPILTSVSEIYEKGKENITLGINFKDDNRINCLLGGDG
CCCCEEEEECHHHHHCCHHCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCC
AYSRHNYKAEENIKDYFSANFAGDYDLELEKGKRLCLYYATSGNGISSNVIGMNMDSEEI
CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCEEECCCCHHHH
KEAINKSKDCIFLSISVEDYSE
HHHHCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA