| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310233
Identifier: 18310233
GI number: 18310233
Start: 1458882
End: 1459865
Strand: Reverse
Name: 18310233
Synonym: CPE1251
Alternate gene names: NA
Gene position: 1459865-1458882 (Counterclockwise)
Preceding gene: 18310234
Following gene: 18310232
Centisome position: 48.16
GC content: 28.46
Gene sequence:
>984_bases ATGGAGAATAGGAATGAAGATAACTTAATAGATGAATTTAATGAATTAGTTTCAGAAATAAGTAAATCGGTCTTTGATAA ATCTATTTATAGGGATTTAAAACTTACAGAAGAAAATTTAATAAAGACCCTTACAAGTACTTCAGAAAAAACTGCTACAA TAAATAGAAATAACTTAATAAGTTTACAAAATAATTTAAAGGTAATATTAGATGAAGCTATAGCAGACTTTAATTTAGGG GTTCAGCAAGGGGAAGAAGCCTTTGAGAAAAAAGCTAATGAGTTTTTAAATAATATAGAAGAGGTATCTACTAAGTCAAA AGAAAACATTTACCATTTAAAAGATAAGGCAAAGGAAACCTATGATGAAATAGAAAGGTTAAAGGAGCAAGTAGATGGAA TAAATAAAAATATAGGGGAATTATCAGAGGAAGAAGGAATTGAAAATATAGCTAATTTACAAAGAATAGGCAGGGAATTA AGTGAAAAGATAAGGACAAGCAACCACATAGCTAAGGAGCATATAGAAAAAATAGAAGAGATGGATAAAATGCTAAAAGG CGAATGCTTAAGAGTTATGAACTGCGTCAATAAACTAGAAAATAGGTTAAAGGTTGATAAGAGTGAAATTAGAGATAATT TTTTAGGCTTTAAGGAATATATGGGGGAAGGCCTTGAAGAGATAAATTATAATATTAAGTTAGAGTTTAATGAAATAAAG GATCTTTTAGAAGAGGGAAATACAAATATGAATAACTCTATGGAATTATTAAATAGTGCCATAGATAAGTACAATGTTGA TGTAATAGATGCCACAAGAAGGCTTGGGGAGAGGGTCAATAATTTAGATAGAAAAATATCTAATATGAATAAGGGACCTG AGGAACCATTTTTCCATGAAGAGTTAAAAAGTGAATTAGATAAAAAATATTACTTTTTAGTAATTAGCATAGTAATTGTA GGCATTTTAGCAGTTTTATTTTAG
Upstream 100 bases:
>100_bases AAGAGAGCTTGAATTTTATGACTTTTAATGAAGAGATTTAGTAATAAATGAAGATTTATAGTATATAAACTCATATTAGG TAGTGGGGTAGGAGGAAGTT
Downstream 100 bases:
>100_bases GAGAAAACAATGTTAGTTAAAGAATATGAAGTAAAAGTTTCTAAAGATAAAGAGAAAAATAAGGTTTTTTATAATTCACA GAGTTTAAATGAGAAGTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 327; Mature: 327
Protein sequence:
>327_residues MENRNEDNLIDEFNELVSEISKSVFDKSIYRDLKLTEENLIKTLTSTSEKTATINRNNLISLQNNLKVILDEAIADFNLG VQQGEEAFEKKANEFLNNIEEVSTKSKENIYHLKDKAKETYDEIERLKEQVDGINKNIGELSEEEGIENIANLQRIGREL SEKIRTSNHIAKEHIEKIEEMDKMLKGECLRVMNCVNKLENRLKVDKSEIRDNFLGFKEYMGEGLEEINYNIKLEFNEIK DLLEEGNTNMNNSMELLNSAIDKYNVDVIDATRRLGERVNNLDRKISNMNKGPEEPFFHEELKSELDKKYYFLVISIVIV GILAVLF
Sequences:
>Translated_327_residues MENRNEDNLIDEFNELVSEISKSVFDKSIYRDLKLTEENLIKTLTSTSEKTATINRNNLISLQNNLKVILDEAIADFNLG VQQGEEAFEKKANEFLNNIEEVSTKSKENIYHLKDKAKETYDEIERLKEQVDGINKNIGELSEEEGIENIANLQRIGREL SEKIRTSNHIAKEHIEKIEEMDKMLKGECLRVMNCVNKLENRLKVDKSEIRDNFLGFKEYMGEGLEEINYNIKLEFNEIK DLLEEGNTNMNNSMELLNSAIDKYNVDVIDATRRLGERVNNLDRKISNMNKGPEEPFFHEELKSELDKKYYFLVISIVIV GILAVLF >Mature_327_residues MENRNEDNLIDEFNELVSEISKSVFDKSIYRDLKLTEENLIKTLTSTSEKTATINRNNLISLQNNLKVILDEAIADFNLG VQQGEEAFEKKANEFLNNIEEVSTKSKENIYHLKDKAKETYDEIERLKEQVDGINKNIGELSEEEGIENIANLQRIGREL SEKIRTSNHIAKEHIEKIEEMDKMLKGECLRVMNCVNKLENRLKVDKSEIRDNFLGFKEYMGEGLEEINYNIKLEFNEIK DLLEEGNTNMNNSMELLNSAIDKYNVDVIDATRRLGERVNNLDRKISNMNKGPEEPFFHEELKSELDKKYYFLVISIVIV GILAVLF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37952; Mature: 37952
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENRNEDNLIDEFNELVSEISKSVFDKSIYRDLKLTEENLIKTLTSTSEKTATINRNNLI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCEE SLQNNLKVILDEAIADFNLGVQQGEEAFEKKANEFLNNIEEVSTKSKENIYHLKDKAKET EHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YDEIERLKEQVDGINKNIGELSEEEGIENIANLQRIGRELSEKIRTSNHIAKEHIEKIEE HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MDKMLKGECLRVMNCVNKLENRLKVDKSEIRDNFLGFKEYMGEGLEEINYNIKLEFNEIK HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEEEHHHHH DLLEEGNTNMNNSMELLNSAIDKYNVDVIDATRRLGERVNNLDRKISNMNKGPEEPFFHE HHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH ELKSELDKKYYFLVISIVIVGILAVLF HHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MENRNEDNLIDEFNELVSEISKSVFDKSIYRDLKLTEENLIKTLTSTSEKTATINRNNLI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCEE SLQNNLKVILDEAIADFNLGVQQGEEAFEKKANEFLNNIEEVSTKSKENIYHLKDKAKET EHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YDEIERLKEQVDGINKNIGELSEEEGIENIANLQRIGRELSEKIRTSNHIAKEHIEKIEE HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MDKMLKGECLRVMNCVNKLENRLKVDKSEIRDNFLGFKEYMGEGLEEINYNIKLEFNEIK HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEEEHHHHH DLLEEGNTNMNNSMELLNSAIDKYNVDVIDATRRLGERVNNLDRKISNMNKGPEEPFFHE HHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH ELKSELDKKYYFLVISIVIVGILAVLF HHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA