| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is yebQ [H]
Identifier: 18310220
GI number: 18310220
Start: 1445449
End: 1446897
Strand: Direct
Name: yebQ [H]
Synonym: CPE1238
Alternate gene names: 18310220
Gene position: 1445449-1446897 (Clockwise)
Preceding gene: 18310211
Following gene: 18310224
Centisome position: 47.68
GC content: 29.74
Gene sequence:
>1449_bases GTGAATAATGCTAATGAAAACTCTAAAAACACTGAAGATTTAGTTTATAAAAACAGATGGTTTATATTAGCAGTATTAGT AATGCAACCATTCATGGCATGTTTAGACAGTAGCATAGTTAATGTAGCCCTTCCAATTCTTCAAAAAGAACTTGGTGCAA CTATGGCTGGAACTGAATGGATTGTAAGTTCATATTTAATAATAATTTCTGCATCAATTTTAATCTTTGGTAGATTAGGA GATATGCATTCAAAAAGTTCAGTATTTATAAAAGGGATTTTAATATTTGTTCTTGGATCTTTCCTTTGCGGAATATCCCC ATCACTTCCTATTCTAGTATTATCTAGAGTTGTGCAAGCTATTGGTGCCGCTATGTTAATGTCCACTAACCAAGGTATTA TAACAGATGTTTTCCCTCCTAAGGAAAGAGGAAAAGCTTTAGGTATCTCTGGTTCCTTTGTTGCCTTAGGTTCTATATTA GGTCCAGCATTAGGTGGATTCATAGTTACATATTTCACTTGGCACTATATTTTCTTAATAAATGTACCTATAGGTATAAT TTGCTACATATTCGCTAAAAAATATCTACCAATAAGAATTCCTAAGGAATCTGAGTCAATGGATAAGCCTGGAGCAACAA TGTTTTTCATTGCTACAATTCTTATATTTACATCAATATTAATTAGCCAACATTTAGGCTTTACTAGCATATATGTAATC CTAGGATTAATAATTGGACTTATTATTCTTGCTTTATTCTTAATCTATGAAAACAAGATAAAGAATCCTATGCTTCATTT AAGCTTATTTAAAAAGCCAATATTCTCAGTAAGCTTAATATGTGCATTTATTTCCTTTACTGCAATAAATACAATTAATG TTATTCAACCCTTTTACTTAAATGACATTTTAGGCTATAGTCCTGGAAAAATTTCAGTTATAATGACAGCTTATCCAATT GTATTATTTGTTATTGCACCACTTAGTGGAACATTATCAGATAAAATAGGAAGTAAAATACTTACTTTAATAGGATTATT CTTAACAGGAGTTTCAATGATTTTATTATCATCATTAAATAGTAACTCAAGTGAAACATCCATATTCCTTATGTTATCTT TATTAGGTTTTTCAAATGGATTATTCCAATCTCCAAATACAAACCTTATAATGTCCTCTGTTCCTAAGGATAAGCTTGGA ATAGCAGGAGGTACTAATGCCTTAATAAGGAATTTAGGTCTTGCCTTTGGAGTATCAGCTTCAACCTCTATTTTATATGC AAAAATGAGTAAGTTAGCTGGATTTAGAGTTTTAGGATCTGTTCCTAATAGACCTGATATATTTATTTCTGGAATGAGAT TTGTATATATTTTAGTTGCTATTTCATGTTTTATATGCCTTATAATTTCTATAGCTGAATATATTCAATCTAAAAAAAAT AACAAATAA
Upstream 100 bases:
>100_bases TGAGTTTTTTCAATTTTGACAATAAAATTTTGTCGTTTTATAATTGTATAGTTAATGTTTAACAAAAATTTAATTAAAAT TTAATAAAGGAGATGATTAG
Downstream 100 bases:
>100_bases CAAAATAAAAGGTGCTGTATCAAAGATTTTATTAAAATCTACTTTGATACAGCACCTTTTTAATTATTACTTTCTTGTAT GCTCATTATTCCTTGAGGAT
Product: multidrug resistance protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 482; Mature: 482
Protein sequence:
>482_residues MNNANENSKNTEDLVYKNRWFILAVLVMQPFMACLDSSIVNVALPILQKELGATMAGTEWIVSSYLIIISASILIFGRLG DMHSKSSVFIKGILIFVLGSFLCGISPSLPILVLSRVVQAIGAAMLMSTNQGIITDVFPPKERGKALGISGSFVALGSIL GPALGGFIVTYFTWHYIFLINVPIGIICYIFAKKYLPIRIPKESESMDKPGATMFFIATILIFTSILISQHLGFTSIYVI LGLIIGLIILALFLIYENKIKNPMLHLSLFKKPIFSVSLICAFISFTAINTINVIQPFYLNDILGYSPGKISVIMTAYPI VLFVIAPLSGTLSDKIGSKILTLIGLFLTGVSMILLSSLNSNSSETSIFLMLSLLGFSNGLFQSPNTNLIMSSVPKDKLG IAGGTNALIRNLGLAFGVSASTSILYAKMSKLAGFRVLGSVPNRPDIFISGMRFVYILVAISCFICLIISIAEYIQSKKN NK
Sequences:
>Translated_482_residues MNNANENSKNTEDLVYKNRWFILAVLVMQPFMACLDSSIVNVALPILQKELGATMAGTEWIVSSYLIIISASILIFGRLG DMHSKSSVFIKGILIFVLGSFLCGISPSLPILVLSRVVQAIGAAMLMSTNQGIITDVFPPKERGKALGISGSFVALGSIL GPALGGFIVTYFTWHYIFLINVPIGIICYIFAKKYLPIRIPKESESMDKPGATMFFIATILIFTSILISQHLGFTSIYVI LGLIIGLIILALFLIYENKIKNPMLHLSLFKKPIFSVSLICAFISFTAINTINVIQPFYLNDILGYSPGKISVIMTAYPI VLFVIAPLSGTLSDKIGSKILTLIGLFLTGVSMILLSSLNSNSSETSIFLMLSLLGFSNGLFQSPNTNLIMSSVPKDKLG IAGGTNALIRNLGLAFGVSASTSILYAKMSKLAGFRVLGSVPNRPDIFISGMRFVYILVAISCFICLIISIAEYIQSKKN NK >Mature_482_residues MNNANENSKNTEDLVYKNRWFILAVLVMQPFMACLDSSIVNVALPILQKELGATMAGTEWIVSSYLIIISASILIFGRLG DMHSKSSVFIKGILIFVLGSFLCGISPSLPILVLSRVVQAIGAAMLMSTNQGIITDVFPPKERGKALGISGSFVALGSIL GPALGGFIVTYFTWHYIFLINVPIGIICYIFAKKYLPIRIPKESESMDKPGATMFFIATILIFTSILISQHLGFTSIYVI LGLIIGLIILALFLIYENKIKNPMLHLSLFKKPIFSVSLICAFISFTAINTINVIQPFYLNDILGYSPGKISVIMTAYPI VLFVIAPLSGTLSDKIGSKILTLIGLFLTGVSMILLSSLNSNSSETSIFLMLSLLGFSNGLFQSPNTNLIMSSVPKDKLG IAGGTNALIRNLGLAFGVSASTSILYAKMSKLAGFRVLGSVPNRPDIFISGMRFVYILVAISCFICLIISIAEYIQSKKN NK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=415, Percent_Identity=33.4939759036145, Blast_Score=220, Evalue=2e-58, Organism=Escherichia coli, GI1790195, Length=409, Percent_Identity=27.1393643031785, Blast_Score=143, Evalue=3e-35, Organism=Escherichia coli, GI1788710, Length=438, Percent_Identity=28.9954337899543, Blast_Score=143, Evalue=3e-35, Organism=Escherichia coli, GI1789042, Length=412, Percent_Identity=25.2427184466019, Blast_Score=142, Evalue=5e-35, Organism=Escherichia coli, GI1788392, Length=314, Percent_Identity=28.9808917197452, Blast_Score=106, Evalue=3e-24, Organism=Escherichia coli, GI1790146, Length=189, Percent_Identity=24.8677248677249, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI87082231, Length=341, Percent_Identity=20.2346041055718, Blast_Score=62, Evalue=9e-11, Organism=Escherichia coli, GI1788509, Length=136, Percent_Identity=22.7941176470588, Blast_Score=62, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6319770, Length=283, Percent_Identity=26.8551236749117, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6323735, Length=179, Percent_Identity=26.8156424581006, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6324264, Length=165, Percent_Identity=28.4848484848485, Blast_Score=78, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6322958, Length=185, Percent_Identity=28.1081081081081, Blast_Score=74, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6323520, Length=293, Percent_Identity=26.2798634812287, Blast_Score=66, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 52315; Mature: 52315
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNANENSKNTEDLVYKNRWFILAVLVMQPFMACLDSSIVNVALPILQKELGATMAGTEW CCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH IVSSYLIIISASILIFGRLGDMHSKSSVFIKGILIFVLGSFLCGISPSLPILVLSRVVQA HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH IGAAMLMSTNQGIITDVFPPKERGKALGISGSFVALGSILGPALGGFIVTYFTWHYIFLI HHHHHHHCCCCCCEECCCCCHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NVPIGIICYIFAKKYLPIRIPKESESMDKPGATMFFIATILIFTSILISQHLGFTSIYVI HHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LGLIIGLIILALFLIYENKIKNPMLHLSLFKKPIFSVSLICAFISFTAINTINVIQPFYL HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH NDILGYSPGKISVIMTAYPIVLFVIAPLSGTLSDKIGSKILTLIGLFLTGVSMILLSSLN HHHHCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SNSSETSIFLMLSLLGFSNGLFQSPNTNLIMSSVPKDKLGIAGGTNALIRNLGLAFGVSA CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHCCCCCCHHHHHHHHHHHHCCCC STSILYAKMSKLAGFRVLGSVPNRPDIFISGMRFVYILVAISCFICLIISIAEYIQSKKN HHHHHHHHHHHHHCHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NK CC >Mature Secondary Structure MNNANENSKNTEDLVYKNRWFILAVLVMQPFMACLDSSIVNVALPILQKELGATMAGTEW CCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH IVSSYLIIISASILIFGRLGDMHSKSSVFIKGILIFVLGSFLCGISPSLPILVLSRVVQA HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH IGAAMLMSTNQGIITDVFPPKERGKALGISGSFVALGSILGPALGGFIVTYFTWHYIFLI HHHHHHHCCCCCCEECCCCCHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NVPIGIICYIFAKKYLPIRIPKESESMDKPGATMFFIATILIFTSILISQHLGFTSIYVI HHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LGLIIGLIILALFLIYENKIKNPMLHLSLFKKPIFSVSLICAFISFTAINTINVIQPFYL HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH NDILGYSPGKISVIMTAYPIVLFVIAPLSGTLSDKIGSKILTLIGLFLTGVSMILLSSLN HHHHCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SNSSETSIFLMLSLLGFSNGLFQSPNTNLIMSSVPKDKLGIAGGTNALIRNLGLAFGVSA CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHCCCCCCHHHHHHHHHHHHCCCC STSILYAKMSKLAGFRVLGSVPNRPDIFISGMRFVYILVAISCFICLIISIAEYIQSKKN HHHHHHHHHHHHHCHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NK CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]