Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18310219

Identifier: 18310219

GI number: 18310219

Start: 1444528

End: 1445139

Strand: Reverse

Name: 18310219

Synonym: CPE1237

Alternate gene names: NA

Gene position: 1445139-1444528 (Counterclockwise)

Preceding gene: 18310221

Following gene: 18310218

Centisome position: 47.67

GC content: 20.1

Gene sequence:

>612_bases
ATGCTTAAGGTATTTTTTTCTTTTAAAAAACATTTTATAGAACATAAGCTATTGATTCTTTCAGTGGTTCTTTCACTATT
TATGTCTAGCATATTAAAATGGAGTTTCTTCAAATATATAGTTGGTATATTATCTTTTTGTATGATTATGCTAGACTATA
AAGAGAGTTTAGATAATTTTGTTGAAAGCAAAAAATTAATATATAAAAAGTATATAAGGAATATATTCTTTTTAGTTGAT
AGTTTAATTGTAGGATTTATAATAAATGAAGTATTTTGGATACTTACTAAAAATGAAATATTTCAATTTAAAGAAGGGGT
TTTAAAGAGTACATTAATAACAACAATAAGTATAATAGCCATAGTTAATATTGTTTATGCACTTTTTCTAGAAAAATTAG
ATTTTGAAGACATAAAGTGGATAAGTATTGTCTTAACTTTATTTATAATGAATAGCAATGTTATTAATGGAACAATAAAC
AGTTTATACATAATTCAAAGTAAGGATGGATTAAATTTAATTATTACCTTAATAATTGTTTTAGGTATATTTTTTATTAG
CTATTATATATTTAAAACTTTGATTTTACAAAGTATTAAATTAAAAAAATAA

Upstream 100 bases:

>100_bases
TGTTTTAATTTGGAAGAGGGAAAATATCCTATGTTATTATTCATATAAAAGTGTTAGAATAGATACAAAGGAAATAAGTT
ACATCAAGGGAGGACTTAAT

Downstream 100 bases:

>100_bases
ATATAAAAATAGGTATTGGGAAGAATAATAATAAATTATTTCAAATATGAGGAGGTAAAAAATGAAAAATAATTTTTTAA
AACACAAAAAAAGTCCATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MLKVFFSFKKHFIEHKLLILSVVLSLFMSSILKWSFFKYIVGILSFCMIMLDYKESLDNFVESKKLIYKKYIRNIFFLVD
SLIVGFIINEVFWILTKNEIFQFKEGVLKSTLITTISIIAIVNIVYALFLEKLDFEDIKWISIVLTLFIMNSNVINGTIN
SLYIIQSKDGLNLIITLIIVLGIFFISYYIFKTLILQSIKLKK

Sequences:

>Translated_203_residues
MLKVFFSFKKHFIEHKLLILSVVLSLFMSSILKWSFFKYIVGILSFCMIMLDYKESLDNFVESKKLIYKKYIRNIFFLVD
SLIVGFIINEVFWILTKNEIFQFKEGVLKSTLITTISIIAIVNIVYALFLEKLDFEDIKWISIVLTLFIMNSNVINGTIN
SLYIIQSKDGLNLIITLIIVLGIFFISYYIFKTLILQSIKLKK
>Mature_203_residues
MLKVFFSFKKHFIEHKLLILSVVLSLFMSSILKWSFFKYIVGILSFCMIMLDYKESLDNFVESKKLIYKKYIRNIFFLVD
SLIVGFIINEVFWILTKNEIFQFKEGVLKSTLITTISIIAIVNIVYALFLEKLDFEDIKWISIVLTLFIMNSNVINGTIN
SLYIIQSKDGLNLIITLIIVLGIFFISYYIFKTLILQSIKLKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23820; Mature: 23820

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKVFFSFKKHFIEHKLLILSVVLSLFMSSILKWSFFKYIVGILSFCMIMLDYKESLDNF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VESKKLIYKKYIRNIFFLVDSLIVGFIINEVFWILTKNEIFQFKEGVLKSTLITTISIIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNIVYALFLEKLDFEDIKWISIVLTLFIMNSNVINGTINSLYIIQSKDGLNLIITLIIV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEEEEECCCCHHHHHHHHHH
LGIFFISYYIFKTLILQSIKLKK
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKVFFSFKKHFIEHKLLILSVVLSLFMSSILKWSFFKYIVGILSFCMIMLDYKESLDNF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VESKKLIYKKYIRNIFFLVDSLIVGFIINEVFWILTKNEIFQFKEGVLKSTLITTISIIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNIVYALFLEKLDFEDIKWISIVLTLFIMNSNVINGTINSLYIIQSKDGLNLIITLIIV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEEEEECCCCHHHHHHHHHH
LGIFFISYYIFKTLILQSIKLKK
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA