| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18310107
Identifier: 18310107
GI number: 18310107
Start: 1319082
End: 1319525
Strand: Direct
Name: 18310107
Synonym: CPE1125
Alternate gene names: NA
Gene position: 1319082-1319525 (Clockwise)
Preceding gene: 18310106
Following gene: 18310108
Centisome position: 43.51
GC content: 31.76
Gene sequence:
>444_bases ATGAGTAGCTTTAGCATGGAATTTACTGGTTTAGAAGAGCTTATAAAGACTGTAGAAGAATTGGGAACAGAACAAGATTT AGAGAAAACCAACAAAAAAGTTCTTAAAGAATGCGGAGATTTAGCTTATAAAACTGTACAACCATTGATTCATAAGAGTA GAGACAATAGCAAGAGTGGGAGAAAAGGTAGTAGACCATCAGGACATGCAGCAGATAATATTCCACAACCTAAATCTAAG AAAATTAAAGGAAGACAATATGTAATTGTTGGATGGGATAAATCAGATAACAGTAAATATTGGTATATGAAAATAGAAGA ATGGGGATCTAGCCAAAGACCACCGCACCACTCATTTGGTAAAGTTAATAAGATATTAAAGAAACAATATGACAATATAG CAATTAAGGAATATGAAAACTTGATAAAAAAATTAGAAAGATAG
Upstream 100 bases:
>100_bases TATAGTAGAGTGGCAAGGGCGTAAATATAGTATCTATTACCCAGACTTTATGGGGTATAACAAGCAGTACATTAAGTTGA AATGTAAGGAAGTATTATAA
Downstream 100 bases:
>100_bases GAGGTAGGCATGGAAGAAGAATTAGATATTATAGCATTAGTTAGTGAATCATTAGCTGGTCTAAATGTAGATGTTATAGA AGGTTGGTATGATAAAGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: HK97 Family Phage Protein
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MSSFSMEFTGLEELIKTVEELGTEQDLEKTNKKVLKECGDLAYKTVQPLIHKSRDNSKSGRKGSRPSGHAADNIPQPKSK KIKGRQYVIVGWDKSDNSKYWYMKIEEWGSSQRPPHHSFGKVNKILKKQYDNIAIKEYENLIKKLER
Sequences:
>Translated_147_residues MSSFSMEFTGLEELIKTVEELGTEQDLEKTNKKVLKECGDLAYKTVQPLIHKSRDNSKSGRKGSRPSGHAADNIPQPKSK KIKGRQYVIVGWDKSDNSKYWYMKIEEWGSSQRPPHHSFGKVNKILKKQYDNIAIKEYENLIKKLER >Mature_146_residues SSFSMEFTGLEELIKTVEELGTEQDLEKTNKKVLKECGDLAYKTVQPLIHKSRDNSKSGRKGSRPSGHAADNIPQPKSKK IKGRQYVIVGWDKSDNSKYWYMKIEEWGSSQRPPHHSFGKVNKILKKQYDNIAIKEYENLIKKLER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17000; Mature: 16868
Theoretical pI: Translated: 10.12; Mature: 10.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSFSMEFTGLEELIKTVEELGTEQDLEKTNKKVLKECGDLAYKTVQPLIHKSRDNSKSG CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC RKGSRPSGHAADNIPQPKSKKIKGRQYVIVGWDKSDNSKYWYMKIEEWGSSQRPPHHSFG CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHH KVNKILKKQYDNIAIKEYENLIKKLER HHHHHHHHHHCCCHHHHHHHHHHHHCC >Mature Secondary Structure SSFSMEFTGLEELIKTVEELGTEQDLEKTNKKVLKECGDLAYKTVQPLIHKSRDNSKSG CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC RKGSRPSGHAADNIPQPKSKKIKGRQYVIVGWDKSDNSKYWYMKIEEWGSSQRPPHHSFG CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHH KVNKILKKQYDNIAIKEYENLIKKLER HHHHHHHHHHCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA