| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is ytfP [H]
Identifier: 18310065
GI number: 18310065
Start: 1286708
End: 1287886
Strand: Direct
Name: ytfP [H]
Synonym: CPE1083
Alternate gene names: 18310065
Gene position: 1286708-1287886 (Clockwise)
Preceding gene: 18310064
Following gene: 18310066
Centisome position: 42.45
GC content: 29.6
Gene sequence:
>1179_bases ATGGCAGCAATATCTGCAGCAGAAAATCATGAAGTTATTCTTTTAGAAGGTAATGAAAGAATAGGAAAAAAGCTATTTAT TACTGGTAAAGGTAGATGTAATGTAACAAATGCAAAGGATATAAGTGAATTTTTTGATTTTATACCAGGAAATCCACATT TCTTGTATAGTGCATTATATACTTATACTAATATTGATGTAATGAACTTTTTTGAAAATGCTGGAGTTAAATTAAAGGTA GAAAGAGGATCAAGAGTTTTTCCAAATTCAGATAAATCTTCAGATATAATAAGTGGATTATCAAGGGGATTAAATGAAGC TTTGGTAGACTTAAGATTACATAGTAAAGTTAAAGATGTTATTTTTAATAACAATAAAATAGAAGCTGTTATTTTAGAAA ATGGTTCAAAGGTTAAAGGTGACTATTTTATAATAACAACTGGTGGTAAGTCATATCCTCTTACTGGATCAATTGGAATA GGATTTGATTTAGCTAAAAAGATGGGGCACACTATAGTAGAACCAAAACCATCCTTAGTACCTATAGAAATAGAAGAGTC ATGGGTTCGTGAATTACAGGGCCTATCTCTTAGAAATATAGAACTTAAAATAAGGAATAAAAAGAATTCTAAAGTAGTTT ATAGTGGGCAGGGAGAGATGCTATTTACTCACTTTGGAATATCAGGACCTCTTGTTTTAAGTGGTAGTAGATTCATAAAA GATGGTGAGAGATTTGAAATTTCTCTAGATTTAAAGCCTGCCTTAGAGGAAAAACAGTTAGATTTAAGGATTCAAAAGGA TTTTAAAAAGAATTTAAATAAGGATTTTAAAAATTCTTTAGATGAACTTCTTCCAAAGAAACTTATACCTGTTATTATAG AGTTATCTAAAATAGATGAAAATAAAAAGGTCAACTCTATAACAAAGGAAGAGAGAAGAACATTATTAAATCTATTAAAG AATTTAACTTTTACAGTAAAAGGCTTAAGAGATATAGCAGAAGCTATTGTTACTGCTGGAGGGGTTTCAACTAAAGAAAT AGACCCTTCAACAATGCAATCAAAGATTGTAGATAATCTTTACTTTGCAGGGGAAGTTATAGATGTAGATGCCTTTACAG GGGGATATAATGTTCAAATAGCTTTATCAACAGGATATTTAGCAGGAAAATCAATTTAA
Upstream 100 bases:
>100_bases AATGTATTTAATAAAGTTTATTATTAGTTTGATTCAATTAAATTAAGGAGCTGATAAATTGGCTAAAGTAATAGTTATAG GCGCCGGTCCAGCAGGGATG
Downstream 100 bases:
>100_bases TTTTAAAATTATAGTTGCTATAAAGTTAATAAAAATTTTAGTTAGTTTAGTAGAAACTTTATAGTAAACTTAAAGAGAGT ATAAAATTTTACAATGTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MAAISAAENHEVILLEGNERIGKKLFITGKGRCNVTNAKDISEFFDFIPGNPHFLYSALYTYTNIDVMNFFENAGVKLKV ERGSRVFPNSDKSSDIISGLSRGLNEALVDLRLHSKVKDVIFNNNKIEAVILENGSKVKGDYFIITTGGKSYPLTGSIGI GFDLAKKMGHTIVEPKPSLVPIEIEESWVRELQGLSLRNIELKIRNKKNSKVVYSGQGEMLFTHFGISGPLVLSGSRFIK DGERFEISLDLKPALEEKQLDLRIQKDFKKNLNKDFKNSLDELLPKKLIPVIIELSKIDENKKVNSITKEERRTLLNLLK NLTFTVKGLRDIAEAIVTAGGVSTKEIDPSTMQSKIVDNLYFAGEVIDVDAFTGGYNVQIALSTGYLAGKSI
Sequences:
>Translated_392_residues MAAISAAENHEVILLEGNERIGKKLFITGKGRCNVTNAKDISEFFDFIPGNPHFLYSALYTYTNIDVMNFFENAGVKLKV ERGSRVFPNSDKSSDIISGLSRGLNEALVDLRLHSKVKDVIFNNNKIEAVILENGSKVKGDYFIITTGGKSYPLTGSIGI GFDLAKKMGHTIVEPKPSLVPIEIEESWVRELQGLSLRNIELKIRNKKNSKVVYSGQGEMLFTHFGISGPLVLSGSRFIK DGERFEISLDLKPALEEKQLDLRIQKDFKKNLNKDFKNSLDELLPKKLIPVIIELSKIDENKKVNSITKEERRTLLNLLK NLTFTVKGLRDIAEAIVTAGGVSTKEIDPSTMQSKIVDNLYFAGEVIDVDAFTGGYNVQIALSTGYLAGKSI >Mature_391_residues AAISAAENHEVILLEGNERIGKKLFITGKGRCNVTNAKDISEFFDFIPGNPHFLYSALYTYTNIDVMNFFENAGVKLKVE RGSRVFPNSDKSSDIISGLSRGLNEALVDLRLHSKVKDVIFNNNKIEAVILENGSKVKGDYFIITTGGKSYPLTGSIGIG FDLAKKMGHTIVEPKPSLVPIEIEESWVRELQGLSLRNIELKIRNKKNSKVVYSGQGEMLFTHFGISGPLVLSGSRFIKD GERFEISLDLKPALEEKQLDLRIQKDFKKNLNKDFKNSLDELLPKKLIPVIIELSKIDENKKVNSITKEERRTLLNLLKN LTFTVKGLRDIAEAIVTAGGVSTKEIDPSTMQSKIVDNLYFAGEVIDVDAFTGGYNVQIALSTGYLAGKSI
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI2367234, Length=392, Percent_Identity=28.3163265306122, Blast_Score=162, Evalue=3e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 43520; Mature: 43389
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAISAAENHEVILLEGNERIGKKLFITGKGRCNVTNAKDISEFFDFIPGNPHFLYSALY CCCCCCCCCCEEEEEECCCCCCCEEEEEECCEEECCCHHHHHHHHHCCCCCHHHHHHHHH TYTNIDVMNFFENAGVKLKVERGSRVFPNSDKSSDIISGLSRGLNEALVDLRLHSKVKDV HHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH IFNNNKIEAVILENGSKVKGDYFIITTGGKSYPLTGSIGIGFDLAKKMGHTIVEPKPSLV HCCCCCEEEEEEECCCEECCCEEEEEECCCCCCCEECCCCCHHHHHHCCCEEECCCCCEE PIEIEESWVRELQGLSLRNIELKIRNKKNSKVVYSGQGEMLFTHFGISGPLVLSGSRFIK EEEECHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCCEEEEEECCCCCEEECCCHHCC DGERFEISLDLKPALEEKQLDLRIQKDFKKNLNKDFKNSLDELLPKKLIPVIIELSKIDE CCCEEEEEEECCCCCCCHHHCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEHHHCCC NKKVNSITKEERRTLLNLLKNLTFTVKGLRDIAEAIVTAGGVSTKEIDPSTMQSKIVDNL CCHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH YFAGEVIDVDAFTGGYNVQIALSTGYLAGKSI EECCEEEEEEEECCCEEEEEEEEECCCCCCCC >Mature Secondary Structure AAISAAENHEVILLEGNERIGKKLFITGKGRCNVTNAKDISEFFDFIPGNPHFLYSALY CCCCCCCCCEEEEEECCCCCCCEEEEEECCEEECCCHHHHHHHHHCCCCCHHHHHHHHH TYTNIDVMNFFENAGVKLKVERGSRVFPNSDKSSDIISGLSRGLNEALVDLRLHSKVKDV HHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH IFNNNKIEAVILENGSKVKGDYFIITTGGKSYPLTGSIGIGFDLAKKMGHTIVEPKPSLV HCCCCCEEEEEEECCCEECCCEEEEEECCCCCCCEECCCCCHHHHHHCCCEEECCCCCEE PIEIEESWVRELQGLSLRNIELKIRNKKNSKVVYSGQGEMLFTHFGISGPLVLSGSRFIK EEEECHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCCEEEEEECCCCCEEECCCHHCC DGERFEISLDLKPALEEKQLDLRIQKDFKKNLNKDFKNSLDELLPKKLIPVIIELSKIDE CCCEEEEEEECCCCCCCHHHCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEHHHCCC NKKVNSITKEERRTLLNLLKNLTFTVKGLRDIAEAIVTAGGVSTKEIDPSTMQSKIVDNL CCHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH YFAGEVIDVDAFTGGYNVQIALSTGYLAGKSI EECCEEEEEEEECCCEEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]