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The map label for this gene is tdcF [C]

Identifier: 18309994

GI number: 18309994

Start: 1215083

End: 1215463

Strand: Direct

Name: tdcF [C]

Synonym: CPE1012

Alternate gene names: 18309994

Gene position: 1215083-1215463 (Clockwise)

Preceding gene: 18309993

Following gene: 18309995

Centisome position: 40.08

GC content: 31.5

Gene sequence:

>381_bases
ATGGCAAAAGAAATAATAAAAACAAACAAAGCACCAGGTGCAATTGGACCTTATTCACAAGGAATAAAAATAGGAGATTT
TGTTTATACTTCAGGACAAATTCCACTAAATCCTGAAACTGGAGTAATGGCAGGATCAATTGAAGAACAAACAGCTCAAT
CTTTAGAAAATGTAAAGGCTATCTTAGAAGCTGCGGGAACTTCTATGGATAAAGTAATAAAGACTACAGTATTTTTAAGT
GATATGAATGATTTTGTAAGAATGAATGAAGTATATGCTACTTATTTTACAGAAAATCAACCAGCAAGAAGTGCTGTAGA
GGTTGCTAAATTACCTAAAGATGCTAAAATAGAGATTGAAGTTATAGCTACTTTAAAATAG

Upstream 100 bases:

>100_bases
AAGAAGAGAAGAAATAGTAATAATCCATTGAATTTAAATTTTTGCTGTATTAAAATTAAAGTATCAGAAGTAATGTGTTG
AAGAATAGGAGATGTTTTAT

Downstream 100 bases:

>100_bases
TTTCTATATCTTCATAATTAGCAAGATAGGGGAGATTTTACTTATGAATTATAAGACTACAGGAGTTTGTGCTAAGGAGA
TTAATTTTGAAATCGAAGAT

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MAKEIIKTNKAPGAIGPYSQGIKIGDFVYTSGQIPLNPETGVMAGSIEEQTAQSLENVKAILEAAGTSMDKVIKTTVFLS
DMNDFVRMNEVYATYFTENQPARSAVEVAKLPKDAKIEIEVIATLK

Sequences:

>Translated_126_residues
MAKEIIKTNKAPGAIGPYSQGIKIGDFVYTSGQIPLNPETGVMAGSIEEQTAQSLENVKAILEAAGTSMDKVIKTTVFLS
DMNDFVRMNEVYATYFTENQPARSAVEVAKLPKDAKIEIEVIATLK
>Mature_125_residues
AKEIIKTNKAPGAIGPYSQGIKIGDFVYTSGQIPLNPETGVMAGSIEEQTAQSLENVKAILEAAGTSMDKVIKTTVFLSD
MNDFVRMNEVYATYFTENQPARSAVEVAKLPKDAKIEIEVIATLK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=124, Percent_Identity=48.3870967741936, Blast_Score=129, Evalue=8e-31,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=56.4516129032258, Blast_Score=149, Evalue=4e-38,
Organism=Escherichia coli, GI87082396, Length=124, Percent_Identity=54.8387096774194, Blast_Score=143, Evalue=4e-36,
Organism=Escherichia coli, GI1787245, Length=126, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982075, Length=121, Percent_Identity=47.9338842975207, Blast_Score=124, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI25148896, Length=121, Percent_Identity=47.9338842975207, Blast_Score=124, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI71982068, Length=121, Percent_Identity=47.9338842975207, Blast_Score=123, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=46.2809917355372, Blast_Score=117, Evalue=6e-28,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=43.1372549019608, Blast_Score=105, Evalue=2e-24,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=45.1612903225806, Blast_Score=108, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13642; Mature: 13511

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEIIKTNKAPGAIGPYSQGIKIGDFVYTSGQIPLNPETGVMAGSIEEQTAQSLENVKA
CCCCHHHCCCCCCCCCCCCCCCEECCEEEECCCCCCCCCCCCEECCCHHHHHHHHHHHHH
ILEAAGTSMDKVIKTTVFLSDMNDFVRMNEVYATYFTENQPARSAVEVAKLPKDAKIEIE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCCCCEEEE
VIATLK
EEEECC
>Mature Secondary Structure 
AKEIIKTNKAPGAIGPYSQGIKIGDFVYTSGQIPLNPETGVMAGSIEEQTAQSLENVKA
CCCHHHCCCCCCCCCCCCCCCEECCEEEECCCCCCCCCCCCEECCCHHHHHHHHHHHHH
ILEAAGTSMDKVIKTTVFLSDMNDFVRMNEVYATYFTENQPARSAVEVAKLPKDAKIEIE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCCCCEEEE
VIATLK
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]