| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18309974
Identifier: 18309974
GI number: 18309974
Start: 1194885
End: 1195952
Strand: Reverse
Name: 18309974
Synonym: CPE0992
Alternate gene names: NA
Gene position: 1195952-1194885 (Counterclockwise)
Preceding gene: 18309976
Following gene: 18309972
Centisome position: 39.45
GC content: 31.27
Gene sequence:
>1068_bases ATGAATATAAAACCACTTACAATTGGAAATTTAACAGCTAGATTACCTATTATACAAGGAGGAATGGGAATTGGTGTGTC CCTTTCAAATTTAGCTAGTGCTGTAACAAAAGCTGGAGGAATAGGAATTATATCAGGTGCTCAACCTGGATACTTAGAAG AAGACTTTAAAAATAATCCTTTAGAAGCTAATTTAAGAGCTTTAAAAAAACATATAAGAATAGCTAAAGAAAAATCACAA AATGGAATTATAGGAGTTAATTTAATGGTAGCTATGAATAACTACGCAGAGCATGTAAAGGCTGCTATAGACTCTGGAGT TGACTTAATAATTTCAGGAGCTGGTCTTCCCTCTCATCTCCCTAAATTTACTAAAGGTAGCAATGTAAAAATAGCTCCTA TAGTTTCTTCCCTTAAAGCTGCCAAAGTAATTTTAAAACTTTGGGATAGGCATCATAAAGTATCTCCAGATATGATTGTA ATTGAAGGACCAAAAGCTGGAGGACATTTAGGATTTACTAAAGAATCTCTTGAAGATGAAAGTAAAAAGTTTGATTCAAC AATACTAGATATAATAAAAGAAACTTCTATTTATGAAGATAAATATGAAAAGAAAATTCCAATAATAGTTGCAGGTGGAA TTTTTGATGGAAAGGATATTGCAAAATATTTAAAACTAGGTGCAAGTGGAGTTCAAATGGCAACTCGTTTTGTGGCAACT TATGAATGTGATGCAAATATAAAGTTTAAAGAAGCATATATAAATTGTAATAAAGAAAGTATATCCATAGTAAAAAGTCC CGTTGGAATGCCAGGAAGAGCTATTAGGAACTCCTTTGTTCAATTTACAGAAACAGAAAAATCTAAGGTTTCTCATTGTT ATAATTGCCTAATCCCTTGTAATCCTGCTGATACTCCTTATTGCATAAGTCAAGCACTTATAAATGCCGTAAAAGGCGAT ATAGATAATGGACTTATTTTTTGTGGTGAAAATGCCTCAAAAATAGATAAAATAGTATCTGTAGAGACACTTATGAATGA ATTAGAAAAAGATTTATTAGAAGCATAA
Upstream 100 bases:
>100_bases TGTTTATTTCCTGACTTATCCTTATAATATATTTATATTCAAATATTTTAATAATCAAAATATTTGTTTTTTTAATTTTT AGACAGAAAGGATAGTTTCT
Downstream 100 bases:
>100_bases AATAATCTGTATAAAAGAGTAGTTAAACTATTAATTAGTATTTATACTCTTTTATACAGATTTTATTTAATAATTTAATT CTAAAAGACAAAGTCCATGA
Product: oxidoreductase, 2-nitropropane dioxygenase family
Products: NA
Alternate protein names: Nitroalkane oxidase [H]
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MNIKPLTIGNLTARLPIIQGGMGIGVSLSNLASAVTKAGGIGIISGAQPGYLEEDFKNNPLEANLRALKKHIRIAKEKSQ NGIIGVNLMVAMNNYAEHVKAAIDSGVDLIISGAGLPSHLPKFTKGSNVKIAPIVSSLKAAKVILKLWDRHHKVSPDMIV IEGPKAGGHLGFTKESLEDESKKFDSTILDIIKETSIYEDKYEKKIPIIVAGGIFDGKDIAKYLKLGASGVQMATRFVAT YECDANIKFKEAYINCNKESISIVKSPVGMPGRAIRNSFVQFTETEKSKVSHCYNCLIPCNPADTPYCISQALINAVKGD IDNGLIFCGENASKIDKIVSVETLMNELEKDLLEA
Sequences:
>Translated_355_residues MNIKPLTIGNLTARLPIIQGGMGIGVSLSNLASAVTKAGGIGIISGAQPGYLEEDFKNNPLEANLRALKKHIRIAKEKSQ NGIIGVNLMVAMNNYAEHVKAAIDSGVDLIISGAGLPSHLPKFTKGSNVKIAPIVSSLKAAKVILKLWDRHHKVSPDMIV IEGPKAGGHLGFTKESLEDESKKFDSTILDIIKETSIYEDKYEKKIPIIVAGGIFDGKDIAKYLKLGASGVQMATRFVAT YECDANIKFKEAYINCNKESISIVKSPVGMPGRAIRNSFVQFTETEKSKVSHCYNCLIPCNPADTPYCISQALINAVKGD IDNGLIFCGENASKIDKIVSVETLMNELEKDLLEA >Mature_355_residues MNIKPLTIGNLTARLPIIQGGMGIGVSLSNLASAVTKAGGIGIISGAQPGYLEEDFKNNPLEANLRALKKHIRIAKEKSQ NGIIGVNLMVAMNNYAEHVKAAIDSGVDLIISGAGLPSHLPKFTKGSNVKIAPIVSSLKAAKVILKLWDRHHKVSPDMIV IEGPKAGGHLGFTKESLEDESKKFDSTILDIIKETSIYEDKYEKKIPIIVAGGIFDGKDIAKYLKLGASGVQMATRFVAT YECDANIKFKEAYINCNKESISIVKSPVGMPGRAIRNSFVQFTETEKSKVSHCYNCLIPCNPADTPYCISQALINAVKGD IDNGLIFCGENASKIDKIVSVETLMNELEKDLLEA
Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitronate monooxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004136 - InterPro: IPR013785 [H]
Pfam domain/function: PF03060 NPD [H]
EC number: =1.13.12.16 [H]
Molecular weight: Translated: 38315; Mature: 38315
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIKPLTIGNLTARLPIIQGGMGIGVSLSNLASAVTKAGGIGIISGAQPGYLEEDFKNNP CCCCCEEECCCEEECEEEECCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHCCCC LEANLRALKKHIRIAKEKSQNGIIGVNLMVAMNNYAEHVKAAIDSGVDLIISGAGLPSHL CHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHCCCEEEEECCCCHHHC PKFTKGSNVKIAPIVSSLKAAKVILKLWDRHHKVSPDMIVIEGPKAGGHLGFTKESLEDE CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHH SKKFDSTILDIIKETSIYEDKYEKKIPIIVAGGIFDGKDIAKYLKLGASGVQMATRFVAT HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHEE YECDANIKFKEAYINCNKESISIVKSPVGMPGRAIRNSFVQFTETEKSKVSHCYNCLIPC EECCCCEEEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEC NPADTPYCISQALINAVKGDIDNGLIFCGENASKIDKIVSVETLMNELEKDLLEA CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNIKPLTIGNLTARLPIIQGGMGIGVSLSNLASAVTKAGGIGIISGAQPGYLEEDFKNNP CCCCCEEECCCEEECEEEECCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHCCCC LEANLRALKKHIRIAKEKSQNGIIGVNLMVAMNNYAEHVKAAIDSGVDLIISGAGLPSHL CHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHCCCEEEEECCCCHHHC PKFTKGSNVKIAPIVSSLKAAKVILKLWDRHHKVSPDMIVIEGPKAGGHLGFTKESLEDE CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHH SKKFDSTILDIIKETSIYEDKYEKKIPIIVAGGIFDGKDIAKYLKLGASGVQMATRFVAT HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHEE YECDANIKFKEAYINCNKESISIVKSPVGMPGRAIRNSFVQFTETEKSKVSHCYNCLIPC EECCCCEEEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEC NPADTPYCISQALINAVKGDIDNGLIFCGENASKIDKIVSVETLMNELEKDLLEA CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA