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The map label for this gene is ykoM [H]

Identifier: 18309771

GI number: 18309771

Start: 973186

End: 973629

Strand: Direct

Name: ykoM [H]

Synonym: CPE0789

Alternate gene names: 18309771

Gene position: 973186-973629 (Clockwise)

Preceding gene: 18309770

Following gene: 18309772

Centisome position: 32.1

GC content: 24.1

Gene sequence:

>444_bases
ATGGATAATATAAAAGATTTAATTAAAGAAAATGAATTAGAATTATCAACATTAGTTGTCTTTACAAGAGCAGAGCATAC
TATTCATAAAAAAGAATTTCAGACAATCAAGGAAAGTGGATTAACCATAGCTCAATTTGGAGTTTTGGAAGTTCTATACA
ATAAAGGTGACTTAAGAATATGTGAAATAATTGAAAAAATCTTAACAACATCAGGAAATATAACAGTTGTTATAAAAAAT
CTAGAAAAGGATGGACTAGTGAAAAAAAATGCAGATCCAGAAGATAAAAGATCTTGTATAATATCATTAACAGATGAAGG
TAGAAAGGTTATAGAAAATATTTTACCTAGTCATATTAATAATATTAAAAATATTTTTGAAGTTTTAACCGATGAAGAGA
AAATCACATTGAAGAATATATTAAAAAAATTTAAAAATGTATAG

Upstream 100 bases:

>100_bases
GAAAGCTATATCAAATCTTTACTTGGTTTGATATAGCTTTTTTATTTAAATAATTATATTTAATGTTGACAATATCATTA
ATTAGTGATAAATTAAAAGC

Downstream 100 bases:

>100_bases
TCATCAATAAAAAATAAAAATTTTTAGGTATTTATCACTAATTAGTGATAAAAGTTGTTTTAGATAAAAAGGGGGCAAAG
CAATGAAAAAATTCAGAACT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MDNIKDLIKENELELSTLVVFTRAEHTIHKKEFQTIKESGLTIAQFGVLEVLYNKGDLRICEIIEKILTTSGNITVVIKN
LEKDGLVKKNADPEDKRSCIISLTDEGRKVIENILPSHINNIKNIFEVLTDEEKITLKNILKKFKNV

Sequences:

>Translated_147_residues
MDNIKDLIKENELELSTLVVFTRAEHTIHKKEFQTIKESGLTIAQFGVLEVLYNKGDLRICEIIEKILTTSGNITVVIKN
LEKDGLVKKNADPEDKRSCIISLTDEGRKVIENILPSHINNIKNIFEVLTDEEKITLKNILKKFKNV
>Mature_147_residues
MDNIKDLIKENELELSTLVVFTRAEHTIHKKEFQTIKESGLTIAQFGVLEVLYNKGDLRICEIIEKILTTSGNITVVIKN
LEKDGLVKKNADPEDKRSCIISLTDEGRKVIENILPSHINNIKNIFEVLTDEEKITLKNILKKFKNV

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16788; Mature: 16788

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNIKDLIKENELELSTLVVFTRAEHTIHKKEFQTIKESGLTIAQFGVLEVLYNKGDLRI
CCHHHHHHHCCCCCHHHHHEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHH
CEIIEKILTTSGNITVVIKNLEKDGLVKKNADPEDKRSCIISLTDEGRKVIENILPSHIN
HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHH
NIKNIFEVLTDEEKITLKNILKKFKNV
HHHHHHHHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MDNIKDLIKENELELSTLVVFTRAEHTIHKKEFQTIKESGLTIAQFGVLEVLYNKGDLRI
CCHHHHHHHCCCCCHHHHHEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHH
CEIIEKILTTSGNITVVIKNLEKDGLVKKNADPEDKRSCIISLTDEGRKVIENILPSHIN
HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHH
NIKNIFEVLTDEEKITLKNILKKFKNV
HHHHHHHHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]