| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is pfoS/R
Identifier: 18309767
GI number: 18309767
Start: 969653
End: 970711
Strand: Direct
Name: pfoS/R
Synonym: CPE0785
Alternate gene names: NA
Gene position: 969653-970711 (Clockwise)
Preceding gene: 18309765
Following gene: 18309768
Centisome position: 31.99
GC content: 31.54
Gene sequence:
>1059_bases ATGACACAAAAGAATGTTTCAAAGAAAGATAAGTTAACACCAAAAGATTATTTAAATAAAGTTTTGGCAGGAACTGCAAC AGGGATAGTTGTAGGGTTAATTCCTAATGCAATATTAGGATCAATTTTTAAAGGGCTAATAGGGGTTTCACCTATATTTT CTACTTTTTATAATGCCGTGAATATTATGCAGTTTATAGTACCTGTGCTTGTGGGAGTCTTAGTTGGATTACAGTTTGAA TTAAATGCTATGCAATCAGTTATAGTTGGAGCAGCAGTATTCTTAGGTTCAGGGGCATTTAAGGTTACTGAAGCAGGAGT ACAAATGGTTGGTATTGGAGACTTAATAAATATAATGTTAGTTTCTTGTATAGCTGTATTTGTTATTAGATTAATAGGAA ATAAATTAGGATCTTTAACTATATTATTACTACCTATTATAGCTGGCGCTGGAGTTGGTATAATAGGAATGTTTATGTTA CCTTATGTAAGACAAATTACCATAGTAATTGGAGATATAATGAATAACTTTACTACTTTACAGCCATTATTAATGTGTAT TTTAATAAGTGTTTCATTCTCAATATTAATTATTTCACCAATTTCAACTGTGGCAATAGGTATAGCTATTGGAATAACTG GCTTAGGAGCTGGGGCAGCTGCCATAGGAGTTACTGCTTGTACAGCAGTTTTAGTTGCAGGATCAAGAAGAGTAAATCAA AGTGGAGTTACTTTATCAGTATTATTAGGAGCTATGAAAATGATGATGCCAAACCTAGTAGAATACCCAATAATAGCAGT TCCAATAATAGCAAATGGAATACTAAGTGGAATAGGAGCTTATTTATTTAATATATTAGGTACACCTAATAGTGCAGGAT TTGGTATAGTTGGATTAGTTGGACCTTTAGCGGCTATAAATACTCCAGGGGCTACAAATGCTATATTTGGAGTAATAATG GCATTCTTTGTAATACCTTTTGTAGGAGCATTTATTATTGAATGGTTCTGTAGAAAAGTTATACATTTATATGATGAAAA TATTTTTAAATATATTTAA
Upstream 100 bases:
>100_bases CTTTGAATAATAAATATTTTTAGAGAAATAATATTTAATGAATTTTGTATTGTTATAGATTTTAACTAACAAAAAATTTT ATAATAGGAAGAAGAGAGAG
Downstream 100 bases:
>100_bases TTTACAAAAAAGATAATAGAGGAGAGTTGATTTAAATGAAAATCGCAATTGTTGGAGCAGGAGCAATGGGCTCACGTTAT GGATATATGTTACATGAAGC
Product: regulatory protein
Products: NA
Alternate protein names: PTS System IIC Component; PTS System Fructose-Specific IIBC Component; Membrane Spanning Protein; Phosphotransferase System; Pts System Fructose-Specific IIbc Component; Xin Regulator-Like Membrane Protein
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MTQKNVSKKDKLTPKDYLNKVLAGTATGIVVGLIPNAILGSIFKGLIGVSPIFSTFYNAVNIMQFIVPVLVGVLVGLQFE LNAMQSVIVGAAVFLGSGAFKVTEAGVQMVGIGDLINIMLVSCIAVFVIRLIGNKLGSLTILLLPIIAGAGVGIIGMFML PYVRQITIVIGDIMNNFTTLQPLLMCILISVSFSILIISPISTVAIGIAIGITGLGAGAAAIGVTACTAVLVAGSRRVNQ SGVTLSVLLGAMKMMMPNLVEYPIIAVPIIANGILSGIGAYLFNILGTPNSAGFGIVGLVGPLAAINTPGATNAIFGVIM AFFVIPFVGAFIIEWFCRKVIHLYDENIFKYI
Sequences:
>Translated_352_residues MTQKNVSKKDKLTPKDYLNKVLAGTATGIVVGLIPNAILGSIFKGLIGVSPIFSTFYNAVNIMQFIVPVLVGVLVGLQFE LNAMQSVIVGAAVFLGSGAFKVTEAGVQMVGIGDLINIMLVSCIAVFVIRLIGNKLGSLTILLLPIIAGAGVGIIGMFML PYVRQITIVIGDIMNNFTTLQPLLMCILISVSFSILIISPISTVAIGIAIGITGLGAGAAAIGVTACTAVLVAGSRRVNQ SGVTLSVLLGAMKMMMPNLVEYPIIAVPIIANGILSGIGAYLFNILGTPNSAGFGIVGLVGPLAAINTPGATNAIFGVIM AFFVIPFVGAFIIEWFCRKVIHLYDENIFKYI >Mature_351_residues TQKNVSKKDKLTPKDYLNKVLAGTATGIVVGLIPNAILGSIFKGLIGVSPIFSTFYNAVNIMQFIVPVLVGVLVGLQFEL NAMQSVIVGAAVFLGSGAFKVTEAGVQMVGIGDLINIMLVSCIAVFVIRLIGNKLGSLTILLLPIIAGAGVGIIGMFMLP YVRQITIVIGDIMNNFTTLQPLLMCILISVSFSILIISPISTVAIGIAIGITGLGAGAAAIGVTACTAVLVAGSRRVNQS GVTLSVLLGAMKMMMPNLVEYPIIAVPIIANGILSGIGAYLFNILGTPNSAGFGIVGLVGPLAAINTPGATNAIFGVIMA FFVIPFVGAFIIEWFCRKVIHLYDENIFKYI
Specific function: Unknown
COG id: COG3641
COG function: function code R; Predicted membrane protein, putative toxin regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36691; Mature: 36560
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQKNVSKKDKLTPKDYLNKVLAGTATGIVVGLIPNAILGSIFKGLIGVSPIFSTFYNAV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIMQFIVPVLVGVLVGLQFELNAMQSVIVGAAVFLGSGAFKVTEAGVQMVGIGDLINIML HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEECHHHHHHHHH VSCIAVFVIRLIGNKLGSLTILLLPIIAGAGVGIIGMFMLPYVRQITIVIGDIMNNFTTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QPLLMCILISVSFSILIISPISTVAIGIAIGITGLGAGAAAIGVTACTAVLVAGSRRVNQ HHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC SGVTLSVLLGAMKMMMPNLVEYPIIAVPIIANGILSGIGAYLFNILGTPNSAGFGIVGLV CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH GPLAAINTPGATNAIFGVIMAFFVIPFVGAFIIEWFCRKVIHLYDENIFKYI HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TQKNVSKKDKLTPKDYLNKVLAGTATGIVVGLIPNAILGSIFKGLIGVSPIFSTFYNAV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIMQFIVPVLVGVLVGLQFELNAMQSVIVGAAVFLGSGAFKVTEAGVQMVGIGDLINIML HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEECHHHHHHHHH VSCIAVFVIRLIGNKLGSLTILLLPIIAGAGVGIIGMFMLPYVRQITIVIGDIMNNFTTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QPLLMCILISVSFSILIISPISTVAIGIAIGITGLGAGAAAIGVTACTAVLVAGSRRVNQ HHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC SGVTLSVLLGAMKMMMPNLVEYPIIAVPIIANGILSGIGAYLFNILGTPNSAGFGIVGLV CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH GPLAAINTPGATNAIFGVIMAFFVIPFVGAFIIEWFCRKVIHLYDENIFKYI HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA