| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is trxB [H]
Identifier: 18309765
GI number: 18309765
Start: 965438
End: 967108
Strand: Direct
Name: trxB [H]
Synonym: CPE0783
Alternate gene names: 18309765
Gene position: 965438-967108 (Clockwise)
Preceding gene: 18309764
Following gene: 18309767
Centisome position: 31.85
GC content: 31.36
Gene sequence:
>1671_bases ATGAGTAAAATATATGATTTGGTTATTATTGGGGGAGGGCCTGCAGGACTTTCAGCAGGTATATATGCCGGAAGAGCTAA GATGAATACCTTGATAATAGAAAAGGGAGAATTAGGAGGACAAGTCAATAAAACCTTCGACATATCTAATTATCCTGGAT CTAGAAATACAAATGGTCCTAAACTTATGAGTGAAATGAGAGCTCAGGCAGAGGATTTTAAAGTTAAGTTTATGAATGGA GAAGTCCTTGAAGTAAGTTTAGAGGGAGATATTAAGGAAATAAAAACTGACAAAGGTTTAGTTCAGGGAAGATCTGTAAT AATTGCTACTGGGGCAGCACCTAGACAACTTGGATTTAAAGGGGAAGAAGAATTTACAGGAAGAGGAGTTGCATATTGTG CAACTTGTGATGGTCAGTTTTTTGAAGGATTAGAGGTATTTGTAATAGGAGCTGGTTTTGCAGCGGCTGAGGAAGCAATA TTCTTAACTAGATTTGCATCAAAGGTAACTGTAATAGCTAGAGAACCAGAATTTACTTGTGCAAAATCTATAGCAGATAA GGTTCTTTCTAACCCTAAAATTGAGGTGAAATTTAATACTGAAATAATTGAAGCTAAGGGCAAAGACATGGTAAACTATG CTAAGTTCAAGAATAATGTAACAGGAGAAATTTTTGAATACAGAGCAAAAAAAGAGGATGGAGCCTTTGGAATATTTGTA TTCGTTGGTTATGCCCCTAAAAGTGAATTGTTTAAAGATATTTTAGAGTTAGACAAGCAAGGATATATTATAACTAATGA AGATATGGAAACTAATATTAATGGGGTTTATGTTGCTGGAGATTTACGTCCAAAATCTTTAAGACAAATAGTTACAGCTG TATCAGATGGAGCTATTGCTGCCACTACAGCAGAGAGATACGTTAAAGAGCTAAAAGAAAAGCTTGGTATAGAAGATGAA TATTTAGAAGAAGAGGAAAATATCCAAGAAGAAAAAAATAGTGATGAAAATAATGATTTGGGAAATATATCAAGAAAAAG TTCCCTATTAAATGATGTATTAAGAGCTCAGCTAAAAGGAATTTTAAGCAAAATAGAAAATGAAGTAACTTTAGTTTCTA TAGTTGATAGAAGTAATACAAAATCTATAGAACTTAGAGACTTAGTATTAGATATATCAGATTTAGGAGAAAAAATTAAT GCTAAGATATTTAATAGAGGCGAAAATAAAGAGGTTGAAGAGAAGATAAATGCTGATAAATATCCAATAGTTGCACTTTT AGACGAAAATGAAAATTATAGTGGAATTAAGTTTCATGGTGTTCCAGGAGGACATGAGTTAAATTCATTTATTTTAGCTA TATATAACTTAGGTGGTCCAGGTCAAGGTATTGATGAAGGAGTACTTGATGAAATAAAGAAATTAGATAAAAAGACTAAT ATTAAGGTTTGTGTATCACTATCATGTCATTTATGCCCTGATGTTGTAGTTAGTGCACAAAGAATAGCAAAAGAAAATAA AAATATAGAAGCTGAAATGATTGATTTAGCTAATTTTAAAGATATAAAAGATGAATTTAAAATAATGAGTGTACCAGCTC TAATAGTAAACAATAAAGATGTTTACTTTGGAAGCAAAAAAATAGAAGAAATTTTAGAGATAATAAAATAA
Upstream 100 bases:
>100_bases TTTAGTTAATTAATTGAAATTAAAACATTTTTAAGTTATTTCAAAGTAGATAGTTTAAAAATATTTTGAATAGTAAGGAC TAAGGAGGAGACGTAAATTT
Downstream 100 bases:
>100_bases TTTTATTATAAAACACCACAAAATAACCTTAACAATTTAATTTTGTTAAGGTTATTTTTATAGATTTAAGTTAATAGTTC TGCTTTAAGTGAATATTTGT
Product: thioredoxin reductase
Products: NA
Alternate protein names: TRXR [H]
Number of amino acids: Translated: 556; Mature: 555
Protein sequence:
>556_residues MSKIYDLVIIGGGPAGLSAGIYAGRAKMNTLIIEKGELGGQVNKTFDISNYPGSRNTNGPKLMSEMRAQAEDFKVKFMNG EVLEVSLEGDIKEIKTDKGLVQGRSVIIATGAAPRQLGFKGEEEFTGRGVAYCATCDGQFFEGLEVFVIGAGFAAAEEAI FLTRFASKVTVIAREPEFTCAKSIADKVLSNPKIEVKFNTEIIEAKGKDMVNYAKFKNNVTGEIFEYRAKKEDGAFGIFV FVGYAPKSELFKDILELDKQGYIITNEDMETNINGVYVAGDLRPKSLRQIVTAVSDGAIAATTAERYVKELKEKLGIEDE YLEEEENIQEEKNSDENNDLGNISRKSSLLNDVLRAQLKGILSKIENEVTLVSIVDRSNTKSIELRDLVLDISDLGEKIN AKIFNRGENKEVEEKINADKYPIVALLDENENYSGIKFHGVPGGHELNSFILAIYNLGGPGQGIDEGVLDEIKKLDKKTN IKVCVSLSCHLCPDVVVSAQRIAKENKNIEAEMIDLANFKDIKDEFKIMSVPALIVNNKDVYFGSKKIEEILEIIK
Sequences:
>Translated_556_residues MSKIYDLVIIGGGPAGLSAGIYAGRAKMNTLIIEKGELGGQVNKTFDISNYPGSRNTNGPKLMSEMRAQAEDFKVKFMNG EVLEVSLEGDIKEIKTDKGLVQGRSVIIATGAAPRQLGFKGEEEFTGRGVAYCATCDGQFFEGLEVFVIGAGFAAAEEAI FLTRFASKVTVIAREPEFTCAKSIADKVLSNPKIEVKFNTEIIEAKGKDMVNYAKFKNNVTGEIFEYRAKKEDGAFGIFV FVGYAPKSELFKDILELDKQGYIITNEDMETNINGVYVAGDLRPKSLRQIVTAVSDGAIAATTAERYVKELKEKLGIEDE YLEEEENIQEEKNSDENNDLGNISRKSSLLNDVLRAQLKGILSKIENEVTLVSIVDRSNTKSIELRDLVLDISDLGEKIN AKIFNRGENKEVEEKINADKYPIVALLDENENYSGIKFHGVPGGHELNSFILAIYNLGGPGQGIDEGVLDEIKKLDKKTN IKVCVSLSCHLCPDVVVSAQRIAKENKNIEAEMIDLANFKDIKDEFKIMSVPALIVNNKDVYFGSKKIEEILEIIK >Mature_555_residues SKIYDLVIIGGGPAGLSAGIYAGRAKMNTLIIEKGELGGQVNKTFDISNYPGSRNTNGPKLMSEMRAQAEDFKVKFMNGE VLEVSLEGDIKEIKTDKGLVQGRSVIIATGAAPRQLGFKGEEEFTGRGVAYCATCDGQFFEGLEVFVIGAGFAAAEEAIF LTRFASKVTVIAREPEFTCAKSIADKVLSNPKIEVKFNTEIIEAKGKDMVNYAKFKNNVTGEIFEYRAKKEDGAFGIFVF VGYAPKSELFKDILELDKQGYIITNEDMETNINGVYVAGDLRPKSLRQIVTAVSDGAIAATTAERYVKELKEKLGIEDEY LEEEENIQEEKNSDENNDLGNISRKSSLLNDVLRAQLKGILSKIENEVTLVSIVDRSNTKSIELRDLVLDISDLGEKINA KIFNRGENKEVEEKINADKYPIVALLDENENYSGIKFHGVPGGHELNSFILAIYNLGGPGQGIDEGVLDEIKKLDKKTNI KVCVSLSCHLCPDVVVSAQRIAKENKNIEAEMIDLANFKDIKDEFKIMSVPALIVNNKDVYFGSKKIEEILEIIK
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787114, Length=322, Percent_Identity=35.7142857142857, Blast_Score=181, Evalue=2e-46, Organism=Escherichia coli, GI87081763, Length=314, Percent_Identity=32.484076433121, Blast_Score=155, Evalue=8e-39, Organism=Saccharomyces cerevisiae, GI6321898, Length=319, Percent_Identity=33.8557993730408, Blast_Score=165, Evalue=1e-41, Organism=Saccharomyces cerevisiae, GI6320560, Length=321, Percent_Identity=31.7757009345794, Blast_Score=155, Evalue=2e-38,
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - InterPro: IPR005982 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.8.1.9 [H]
Molecular weight: Translated: 61312; Mature: 61181
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIYDLVIIGGGPAGLSAGIYAGRAKMNTLIIEKGELGGQVNKTFDISNYPGSRNTNGP CCCEEEEEEECCCCCCCCCCEEECCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCH KLMSEMRAQAEDFKVKFMNGEVLEVSLEGDIKEIKTDKGLVQGRSVIIATGAAPRQLGFK HHHHHHHCCCCCEEEEEECCEEEEEEECCCHHHHHCCCCCCCCCEEEEECCCCCHHCCCC GEEEFTGRGVAYCATCDGQFFEGLEVFVIGAGFAAAEEAIFLTRFASKVTVIAREPEFTC CCCCCCCCCEEEEEECCCHHHCCEEEEEEECCCHHHHHHHHHHHHCCEEEEEEECCCHHH AKSIADKVLSNPKIEVKFNTEIIEAKGKDMVNYAKFKNNVTGEIFEYRAKKEDGAFGIFV HHHHHHHHHCCCCEEEEECCEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEE FVGYAPKSELFKDILELDKQGYIITNEDMETNINGVYVAGDLRPKSLRQIVTAVSDGAIA EEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEE ATTAERYVKELKEKLGIEDEYLEEEENIQEEKNSDENNDLGNISRKSSLLNDVLRAQLKG EHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH ILSKIENEVTLVSIVDRSNTKSIELRDLVLDISDLGEKINAKIFNRGENKEVEEKINADK HHHHHCCCEEEEEEEECCCCCCEEHHHHEEEHHHHCCHHCHHEECCCCCCCHHHHCCCCC YPIVALLDENENYSGIKFHGVPGGHELNSFILAIYNLGGPGQGIDEGVLDEIKKLDKKTN CCEEEEEECCCCCCCEEEECCCCCCHHCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCC IKVCVSLSCHLCPDVVVSAQRIAKENKNIEAEMIDLANFKDIKDEFKIMSVPALIVNNKD EEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHEEEEECEEEECCCE VYFGSKKIEEILEIIK EEECHHHHHHHHHHHC >Mature Secondary Structure SKIYDLVIIGGGPAGLSAGIYAGRAKMNTLIIEKGELGGQVNKTFDISNYPGSRNTNGP CCEEEEEEECCCCCCCCCCEEECCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCH KLMSEMRAQAEDFKVKFMNGEVLEVSLEGDIKEIKTDKGLVQGRSVIIATGAAPRQLGFK HHHHHHHCCCCCEEEEEECCEEEEEEECCCHHHHHCCCCCCCCCEEEEECCCCCHHCCCC GEEEFTGRGVAYCATCDGQFFEGLEVFVIGAGFAAAEEAIFLTRFASKVTVIAREPEFTC CCCCCCCCCEEEEEECCCHHHCCEEEEEEECCCHHHHHHHHHHHHCCEEEEEEECCCHHH AKSIADKVLSNPKIEVKFNTEIIEAKGKDMVNYAKFKNNVTGEIFEYRAKKEDGAFGIFV HHHHHHHHHCCCCEEEEECCEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEE FVGYAPKSELFKDILELDKQGYIITNEDMETNINGVYVAGDLRPKSLRQIVTAVSDGAIA EEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEE ATTAERYVKELKEKLGIEDEYLEEEENIQEEKNSDENNDLGNISRKSSLLNDVLRAQLKG EHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH ILSKIENEVTLVSIVDRSNTKSIELRDLVLDISDLGEKINAKIFNRGENKEVEEKINADK HHHHHCCCEEEEEEEECCCCCCEEHHHHEEEHHHHCCHHCHHEECCCCCCCHHHHCCCCC YPIVALLDENENYSGIKFHGVPGGHELNSFILAIYNLGGPGQGIDEGVLDEIKKLDKKTN CCEEEEEECCCCCCCEEEECCCCCCHHCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCC IKVCVSLSCHLCPDVVVSAQRIAKENKNIEAEMIDLANFKDIKDEFKIMSVPALIVNNKD EEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHEEEEECEEEECCCE VYFGSKKIEEILEIIK EEECHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8223622; 2537814 [H]