| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is nanM [H]
Identifier: 18309708
GI number: 18309708
Start: 903129
End: 904283
Strand: Direct
Name: nanM [H]
Synonym: CPE0726
Alternate gene names: 18309708
Gene position: 903129-904283 (Clockwise)
Preceding gene: 18309707
Following gene: 18309709
Centisome position: 29.79
GC content: 30.65
Gene sequence:
>1155_bases ATGAAAAAGATATGGAAGTATGGGGTACTACTTGCATTACCATTAGTTTTAGCTGGATGTGGAAATAAGCCTGCAGAGGA TAGTAATAAAAATAAGGAAATTACTTCAATTAAGTGGACTGTTGATGGAGAGTTAGAAGCTCAAAAAGGTCAAAGCAAAA ATATAGGAACAGCAGGTTTACTTTATGGTAAAACAAAAGATTATATAGTTGTGGGAGGTGGAGCAAACTTTCCAGAGGAG CCAGTGGCAAAAGGAGGAGCTAAAAAGCTTTATCCTGATATATATGTATTAAAAAATGAAAATGGAGATTTAAAGCAAGT AGATCATACAACATTAGATTATGAAATAGGGTATGGAAGTTCAATAACTACTGAGGAAGGAATTTATTATGTAGGTGGAA GCCCTAATAAAGAAGAAGGAAATAACGTTTCTCTTATTACAACTGATGAAAAAGGTAAAATTGGTTTAAAGCATATTGGA GATTTACCTTTTACATTTAGTGATGGCTTTGCAGTTAAAAAAGATAAAGATATTTATTTAGGACTTGGAAAACAAGATGG AAAAGCTAGTAATAAGGTTTATAAATTTAATGTTGAAACAGGAAAAACAGAAGAATTAAAGGAAATACCAGGAGAACCTA CTAGAAATCAAGCTGTTGCTCAATTATTAGGTGATGATATATACGTATTTAGTGGTGGAGATAAAATTGCTTACACAGAT GGTTATAAATATAGCATTAAAGATAATTCATGGACTCAAGTAGCTGACGTTAAAATAGGAAATGAAGAAATTTCACTTTT AGGTGCTAATTCAGTTAAATTAAATGAAGATGAAATGCTTGTTATAGGTGGATTTAATAAAGCAGTTTATGATGATGCTG TAAAAAACTTAAACACACTAAAAGATGAAAGTCTAGCTGAATTTAAGAAAGAGTATTTTGGAAGAGACCCTCAAGATTTT GCTTGGAATACAAAAGTACTAATTTATAACTCAAAAAATAATGAGTGGAAGTCAATTGGAGATGTACCATTTAATGCTCC ATGTGGAGAAGCATTAATATTAGATGGAGATAATATCTTCTCAATAAATGGAGAAATCAAACCAGGAATTAGAACAAATA AAATTTACTCAGGTGAATTAATCTATAAAAAGTAA
Upstream 100 bases:
>100_bases TGTCTTATATTGAAATGAATTTAAAATATTTAGAGAGTGGAGCTAATAAATAAGAAATTATTAAAAATATTATTTTATGG TTTGAAAGGGGTAAAAGATT
Downstream 100 bases:
>100_bases ATAAAATGAGAGTGAAAAAATAAACAAAATAGGCGTGTATCAAAATATAATAAAACTTACAGCTATTTTTAATAGGTATT AAATTAGCTTTAGAATATTT
Product: hypothetical protein
Products: NA
Alternate protein names: N-acetylneuraminate mutarotase; Neu5Ac mutarotase; Sialic acid epimerase [H]
Number of amino acids: Translated: 384; Mature: 384
Protein sequence:
>384_residues MKKIWKYGVLLALPLVLAGCGNKPAEDSNKNKEITSIKWTVDGELEAQKGQSKNIGTAGLLYGKTKDYIVVGGGANFPEE PVAKGGAKKLYPDIYVLKNENGDLKQVDHTTLDYEIGYGSSITTEEGIYYVGGSPNKEEGNNVSLITTDEKGKIGLKHIG DLPFTFSDGFAVKKDKDIYLGLGKQDGKASNKVYKFNVETGKTEELKEIPGEPTRNQAVAQLLGDDIYVFSGGDKIAYTD GYKYSIKDNSWTQVADVKIGNEEISLLGANSVKLNEDEMLVIGGFNKAVYDDAVKNLNTLKDESLAEFKKEYFGRDPQDF AWNTKVLIYNSKNNEWKSIGDVPFNAPCGEALILDGDNIFSINGEIKPGIRTNKIYSGELIYKK
Sequences:
>Translated_384_residues MKKIWKYGVLLALPLVLAGCGNKPAEDSNKNKEITSIKWTVDGELEAQKGQSKNIGTAGLLYGKTKDYIVVGGGANFPEE PVAKGGAKKLYPDIYVLKNENGDLKQVDHTTLDYEIGYGSSITTEEGIYYVGGSPNKEEGNNVSLITTDEKGKIGLKHIG DLPFTFSDGFAVKKDKDIYLGLGKQDGKASNKVYKFNVETGKTEELKEIPGEPTRNQAVAQLLGDDIYVFSGGDKIAYTD GYKYSIKDNSWTQVADVKIGNEEISLLGANSVKLNEDEMLVIGGFNKAVYDDAVKNLNTLKDESLAEFKKEYFGRDPQDF AWNTKVLIYNSKNNEWKSIGDVPFNAPCGEALILDGDNIFSINGEIKPGIRTNKIYSGELIYKK >Mature_384_residues MKKIWKYGVLLALPLVLAGCGNKPAEDSNKNKEITSIKWTVDGELEAQKGQSKNIGTAGLLYGKTKDYIVVGGGANFPEE PVAKGGAKKLYPDIYVLKNENGDLKQVDHTTLDYEIGYGSSITTEEGIYYVGGSPNKEEGNNVSLITTDEKGKIGLKHIG DLPFTFSDGFAVKKDKDIYLGLGKQDGKASNKVYKFNVETGKTEELKEIPGEPTRNQAVAQLLGDDIYVFSGGDKIAYTD GYKYSIKDNSWTQVADVKIGNEEISLLGANSVKLNEDEMLVIGGFNKAVYDDAVKNLNTLKDESLAEFKKEYFGRDPQDF AWNTKVLIYNSKNNEWKSIGDVPFNAPCGEALILDGDNIFSINGEIKPGIRTNKIYSGELIYKK
Specific function: Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, whic
COG id: COG3055
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 7 Kelch repeats [H]
Homologues:
Organism=Escherichia coli, GI87082419, Length=226, Percent_Identity=26.9911504424779, Blast_Score=92, Evalue=7e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013089 - InterPro: IPR015915 - InterPro: IPR006652 - InterPro: IPR019936 [H]
Pfam domain/function: PF01344 Kelch_1 [H]
EC number: NA
Molecular weight: Translated: 42184; Mature: 42184
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIWKYGVLLALPLVLAGCGNKPAEDSNKNKEITSIKWTVDGELEAQKGQSKNIGTAGL CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEECCCCCCCCCCEEE LYGKTKDYIVVGGGANFPEEPVAKGGAKKLYPDIYVLKNENGDLKQVDHTTLDYEIGYGS EECCCCCEEEECCCCCCCCCHHHCCCCCCCCCEEEEEECCCCCEEECCCEEEEEEECCCC SITTEEGIYYVGGSPNKEEGNNVSLITTDEKGKIGLKHIGDLPFTFSDGFAVKKDKDIYL CCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCEEECCCEEEECCCEEEE GLGKQDGKASNKVYKFNVETGKTEELKEIPGEPTRNQAVAQLLGDDIYVFSGGDKIAYTD EECCCCCCCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCEEEEEC GYKYSIKDNSWTQVADVKIGNEEISLLGANSVKLNEDEMLVIGGFNKAVYDDAVKNLNTL CEEEEECCCCCEEEEEEEECCCEEEEEECCCEEECCCCEEEEECCCHHHHHHHHHHHHHH KDESLAEFKKEYFGRDPQDFAWNTKVLIYNSKNNEWKSIGDVPFNAPCGEALILDGDNIF CHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCEEEECCCCEE SINGEIKPGIRTNKIYSGELIYKK EECCEECCCCCCCEEECCEEEEEC >Mature Secondary Structure MKKIWKYGVLLALPLVLAGCGNKPAEDSNKNKEITSIKWTVDGELEAQKGQSKNIGTAGL CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEECCCCCCCCCCEEE LYGKTKDYIVVGGGANFPEEPVAKGGAKKLYPDIYVLKNENGDLKQVDHTTLDYEIGYGS EECCCCCEEEECCCCCCCCCHHHCCCCCCCCCEEEEEECCCCCEEECCCEEEEEEECCCC SITTEEGIYYVGGSPNKEEGNNVSLITTDEKGKIGLKHIGDLPFTFSDGFAVKKDKDIYL CCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCEEECCCEEEECCCEEEE GLGKQDGKASNKVYKFNVETGKTEELKEIPGEPTRNQAVAQLLGDDIYVFSGGDKIAYTD EECCCCCCCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCEEEEEC GYKYSIKDNSWTQVADVKIGNEEISLLGANSVKLNEDEMLVIGGFNKAVYDDAVKNLNTL CEEEEECCCCCEEEEEEEECCCEEEEEECCCEEECCCCEEEEECCCHHHHHHHHHHHHHH KDESLAEFKKEYFGRDPQDFAWNTKVLIYNSKNNEWKSIGDVPFNAPCGEALILDGDNIF CHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCEEEECCCCEE SINGEIKPGIRTNKIYSGELIYKK EECCEECCCCCCCEEECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA