| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is supH [H]
Identifier: 18309705
GI number: 18309705
Start: 898316
End: 899104
Strand: Direct
Name: supH [H]
Synonym: CPE0723
Alternate gene names: 18309705
Gene position: 898316-899104 (Clockwise)
Preceding gene: 18309704
Following gene: 18309706
Centisome position: 29.63
GC content: 28.64
Gene sequence:
>789_bases ATGATAAAATTTATAGCAACAGATATGGATGGAACTTTATTAAATAGTAAGAAAGAGTTAAGTCCAGAATTCTATGATGT ATTTGAGGAACTAAAGAAAAGAAAGATACTTTTTGCAGCTGCAAGTGGAAGACAATATTATACTTTAGCTAAAGAGTTTA ATGATATAAAAGATGACATGCTATTTATTGCTGAAAATGGAACTTTCGTGGTTTATAAAGGAAAAGAGCTTGTTGTTAAT GGATTAGATAGGGAATTAGCTAATGAACTTATAAGAATAGGAAGAACTATAGAAAATTCAAATGTAGTTTTATGTGGAAA GAATTCAGCATATGTTGAAAGTAGTGATGAAAGATTCTTAGGAGAAGTTAGAAAATACTATGAAAGATGCGAAATAGTAG ATGATTTAGAAAAGGTAGATGATACGGTTTTAAAAGTTACTATGTGCGATTTTAATGGTTCAGAAGAAAATAGCAATAAA TATTTTGATAAGTATAGAGAGGAACTTCAAGTAACTGTTTCAGGGGATATATGGTTAGATATAACTGCTGGAGGAGTTAA TAAAGGAGTGGCCATAAAAGAAATTCAAGATCTTTTAGGAATAGACTTTAAAGAAACTATGGTATTTGGAGATTATTTAA ATGATTTAGAAATGATGGAAAGTGCTTATCATAGTTATGCAATGGAAAATGCTCATGAAGATTTAAAGAAGGTTTCAAGA TTTATAACTCATAAAAATAATGATGAAGATGGAGTTATGCATCAAATAAAAGAAGTTATAGGATTATAG
Upstream 100 bases:
>100_bases TTGATTATTTTAAATAAATTATTTTAGAATTTATATTAAATATATAGAATTAAACATAAAATTAACTTTAATTTATACTT TTACTTAGGAGGATATATAT
Downstream 100 bases:
>100_bases AATTAATTAGAGAGTTGTATTAAAGCAACTCTTTTTTATTTTAATACCATTAATAGTATTTACTCTATAGTTGAAATTTT CTATATGTCATCTAAAACAT
Product: HAD hydrolase, IIB family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MIKFIATDMDGTLLNSKKELSPEFYDVFEELKKRKILFAAASGRQYYTLAKEFNDIKDDMLFIAENGTFVVYKGKELVVN GLDRELANELIRIGRTIENSNVVLCGKNSAYVESSDERFLGEVRKYYERCEIVDDLEKVDDTVLKVTMCDFNGSEENSNK YFDKYREELQVTVSGDIWLDITAGGVNKGVAIKEIQDLLGIDFKETMVFGDYLNDLEMMESAYHSYAMENAHEDLKKVSR FITHKNNDEDGVMHQIKEVIGL
Sequences:
>Translated_262_residues MIKFIATDMDGTLLNSKKELSPEFYDVFEELKKRKILFAAASGRQYYTLAKEFNDIKDDMLFIAENGTFVVYKGKELVVN GLDRELANELIRIGRTIENSNVVLCGKNSAYVESSDERFLGEVRKYYERCEIVDDLEKVDDTVLKVTMCDFNGSEENSNK YFDKYREELQVTVSGDIWLDITAGGVNKGVAIKEIQDLLGIDFKETMVFGDYLNDLEMMESAYHSYAMENAHEDLKKVSR FITHKNNDEDGVMHQIKEVIGL >Mature_262_residues MIKFIATDMDGTLLNSKKELSPEFYDVFEELKKRKILFAAASGRQYYTLAKEFNDIKDDMLFIAENGTFVVYKGKELVVN GLDRELANELIRIGRTIENSNVVLCGKNSAYVESSDERFLGEVRKYYERCEIVDDLEKVDDTVLKVTMCDFNGSEENSNK YFDKYREELQVTVSGDIWLDITAGGVNKGVAIKEIQDLLGIDFKETMVFGDYLNDLEMMESAYHSYAMENAHEDLKKVSR FITHKNNDEDGVMHQIKEVIGL
Specific function: Catalyzes the hydrolysis of sugar phosphate to sugar and inorganic phosphate. Has a wide substrate specificity catalyzing the hydrolysis of fructose-1-P most efficiently, but it remains uncertain if this is the real substrate in vivo [H]
COG id: COG0561
COG function: function code R; Predicted hydrolases of the HAD superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family. SupH subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787043, Length=267, Percent_Identity=35.9550561797753, Blast_Score=147, Evalue=5e-37, Organism=Escherichia coli, GI87081790, Length=265, Percent_Identity=34.3396226415094, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI2367265, Length=274, Percent_Identity=29.1970802919708, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87081741, Length=267, Percent_Identity=24.7191011235955, Blast_Score=70, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR013200 - InterPro: IPR006379 - InterPro: IPR000150 [H]
Pfam domain/function: PF08282 Hydrolase_3 [H]
EC number: =3.1.3.23 [H]
Molecular weight: Translated: 30068; Mature: 30068
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: PS01228 COF_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKFIATDMDGTLLNSKKELSPEFYDVFEELKKRKILFAAASGRQYYTLAKEFNDIKDDM CEEEEEECCCCCCCCCHHHCCCHHHHHHHHHHHCEEEEEECCCCEEEHHHHHHCCCCCCE LFIAENGTFVVYKGKELVVNGLDRELANELIRIGRTIENSNVVLCGKNSAYVESSDERFL EEEECCCEEEEEECCEEEECCCCHHHHHHHHHHCCEECCCCEEEECCCCCEECCCHHHHH GEVRKYYERCEIVDDLEKVDDTVLKVTMCDFNGSEENSNKYFDKYREELQVTVSGDIWLD HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHEEEEEECCEEEE ITAGGVNKGVAIKEIQDLLGIDFKETMVFGDYLNDLEMMESAYHSYAMENAHEDLKKVSR EEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FITHKNNDEDGVMHQIKEVIGL HHHCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MIKFIATDMDGTLLNSKKELSPEFYDVFEELKKRKILFAAASGRQYYTLAKEFNDIKDDM CEEEEEECCCCCCCCCHHHCCCHHHHHHHHHHHCEEEEEECCCCEEEHHHHHHCCCCCCE LFIAENGTFVVYKGKELVVNGLDRELANELIRIGRTIENSNVVLCGKNSAYVESSDERFL EEEECCCEEEEEECCEEEECCCCHHHHHHHHHHCCEECCCCEEEECCCCCEECCCHHHHH GEVRKYYERCEIVDDLEKVDDTVLKVTMCDFNGSEENSNKYFDKYREELQVTVSGDIWLD HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHEEEEEECCEEEE ITAGGVNKGVAIKEIQDLLGIDFKETMVFGDYLNDLEMMESAYHSYAMENAHEDLKKVSR EEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FITHKNNDEDGVMHQIKEVIGL HHHCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]