Click here to switch to the map view.

The map label for this gene is yulB [H]

Identifier: 18309704

GI number: 18309704

Start: 897523

End: 898185

Strand: Direct

Name: yulB [H]

Synonym: CPE0722

Alternate gene names: 18309704

Gene position: 897523-898185 (Clockwise)

Preceding gene: 18309703

Following gene: 18309705

Centisome position: 29.61

GC content: 27.45

Gene sequence:

>663_bases
ATGATAAGAAAAGATCTACAAAAACTTGAACAAGAAGGACTATTAAAACGAACTTATGGTGGGGCTATATTAGAGAGGCA
AACTATTCATGATGATAATATAAGGCCTAGATTAATGAAAAACTTAGGCGAAAAGGACATTATAGCAAAATTAGCATTAA
AAGAAATTAAAGATGGAGATTTTATATTTTTAGATGCATCAACAACAAACTATTCAATTGCTAGTATGCTTTTAAACACA
AAAAAGCAGGTAACTGTAGTAACAAATATGAATAGGATAGCAATACTTTTTGATTCACATCCATCTATAGATGTAATTTG
TATTGGTGGTATTTATAATAAAAACTTAGGGGGGACTATAGGAAGTAAAGCTATAGAGGATGTTAAAAGTTATAGATTTC
ATAAGGCATTTGTAGGGGTTGGAGGAATAAATTTAGTAGAGGACTTCATAAGTAACTTTAACTTAGAAGAAGCTAGTATG
AAAAATGCTATAATTAAATCTAGTTTAAAAACTTATTTAGTTGCTGAAAATGAAAAGTTTTATACTGATGGTATTTGTGA
ATTTGCTAAATGTGAGGATATTGACTTTATAATAAGTGATAAAAAGCCTAATGAAGAAATTTTAAAGCTTTTAAAAGAAA
GAAATATTTCTATAATATACTAG

Upstream 100 bases:

>100_bases
GTTTATGGAAGAAAGATTAGAAGAGATTTTAAGAATATTAAAAAAGAATGGAAAAGTTTTAGTTAAAGATTTAAGTGTTA
AATTTAATGTTACTGAAGGA

Downstream 100 bases:

>100_bases
GACTTAATACTTTACATCTAAATTTATACTTTGATTATTTTAAATAAATTATTTTAGAATTTATATTAAATATATAGAAT
TAAACATAAAATTAACTTTA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MIRKDLQKLEQEGLLKRTYGGAILERQTIHDDNIRPRLMKNLGEKDIIAKLALKEIKDGDFIFLDASTTNYSIASMLLNT
KKQVTVVTNMNRIAILFDSHPSIDVICIGGIYNKNLGGTIGSKAIEDVKSYRFHKAFVGVGGINLVEDFISNFNLEEASM
KNAIIKSSLKTYLVAENEKFYTDGICEFAKCEDIDFIISDKKPNEEILKLLKERNISIIY

Sequences:

>Translated_220_residues
MIRKDLQKLEQEGLLKRTYGGAILERQTIHDDNIRPRLMKNLGEKDIIAKLALKEIKDGDFIFLDASTTNYSIASMLLNT
KKQVTVVTNMNRIAILFDSHPSIDVICIGGIYNKNLGGTIGSKAIEDVKSYRFHKAFVGVGGINLVEDFISNFNLEEASM
KNAIIKSSLKTYLVAENEKFYTDGICEFAKCEDIDFIISDKKPNEEILKLLKERNISIIY
>Mature_220_residues
MIRKDLQKLEQEGLLKRTYGGAILERQTIHDDNIRPRLMKNLGEKDIIAKLALKEIKDGDFIFLDASTTNYSIASMLLNT
KKQVTVVTNMNRIAILFDSHPSIDVICIGGIYNKNLGGTIGSKAIEDVKSYRFHKAFVGVGGINLVEDFISNFNLEEASM
KNAIIKSSLKTYLVAENEKFYTDGICEFAKCEDIDFIISDKKPNEEILKLLKERNISIIY

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788069, Length=220, Percent_Identity=29.5454545454545, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1789829, Length=217, Percent_Identity=26.2672811059908, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082344, Length=218, Percent_Identity=26.1467889908257, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787540, Length=217, Percent_Identity=26.2672811059908, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1789059, Length=219, Percent_Identity=29.6803652968037, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1789519, Length=220, Percent_Identity=25.4545454545455, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI226510968, Length=218, Percent_Identity=27.0642201834862, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789170, Length=203, Percent_Identity=27.0935960591133, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790753, Length=173, Percent_Identity=29.4797687861272, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 24859; Mature: 24859

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKDLQKLEQEGLLKRTYGGAILERQTIHDDNIRPRLMKNLGEKDIIAKLALKEIKDGD
CCHHHHHHHHHCCCHHHHCCCHHEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCCC
FIFLDASTTNYSIASMLLNTKKQVTVVTNMNRIAILFDSHPSIDVICIGGIYNKNLGGTI
EEEEECCCCCHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCEEEEEECCEECCCCCCCH
GSKAIEDVKSYRFHKAFVGVGGINLVEDFISNFNLEEASMKNAIIKSSLKTYLVAENEKF
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEECCCCE
YTDGICEFAKCEDIDFIISDKKPNEEILKLLKERNISIIY
ECCCCHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEC
>Mature Secondary Structure
MIRKDLQKLEQEGLLKRTYGGAILERQTIHDDNIRPRLMKNLGEKDIIAKLALKEIKDGD
CCHHHHHHHHHCCCHHHHCCCHHEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCCC
FIFLDASTTNYSIASMLLNTKKQVTVVTNMNRIAILFDSHPSIDVICIGGIYNKNLGGTI
EEEEECCCCCHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCEEEEEECCEECCCCCCCH
GSKAIEDVKSYRFHKAFVGVGGINLVEDFISNFNLEEASMKNAIIKSSLKTYLVAENEKF
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEECCCCE
YTDGICEFAKCEDIDFIISDKKPNEEILKLLKERNISIIY
ECCCCHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]