| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is yueF [H]
Identifier: 18309702
GI number: 18309702
Start: 894764
End: 895939
Strand: Direct
Name: yueF [H]
Synonym: CPE0720
Alternate gene names: 18309702
Gene position: 894764-895939 (Clockwise)
Preceding gene: 18309701
Following gene: 18309703
Centisome position: 29.52
GC content: 29.34
Gene sequence:
>1176_bases ATGTTTTTTAATGATAAAAAGTTAAAAGGAGCCCTAATAGTTGTTACTTATGCTATTATTTTACACTTTGTGTTTATGAA ATACTCTACAGTATTTGGGGGATTAGGTTATATTACAAGTCTTGTTAAACCATTAATTTTAGGTATAGCAATAGCCTTTG TATTAAATATACCTATGAAGTTTTTTGAGAGAAAGTTATTTAGAAATTTAGAAAATAGCAAAAAATCATGGGTTAGAAGT GCAAAAAGACCTTTAGCTATTACAGTAACAATAATAGTTTTAGTTGGAGCCATAAGTGCCATAATCTTATTTGTTGTTCC TCAACTAACTTCAAGTGTAGTTAAACTTACAGAAAGTATTCCTACTTATTTAAAATCCTTTGAAGTTAATATGAATAATT ATGCTGATTCCACAGTACTTTTAAGTAAAGTTTGGGATCAGGTTATGAATACTTGGCAAGAAATATTAAAAACAGTTACT CATTTATTTGGTGGAATTGCATCTTACCTTGTTGGCTTAACAGTTGATGTAACAACAGCTATCATTGATTTTTGTTTAGC CTTTGTATTAGCTATATACATGCTTTCAAGCAAGGAAAAATTAATATGTCAAATAAAGAAAGTTATGTATGCATATCTTA GAGGAGATATAGCAGATAAAATATTAGAAGTTGGACAAACTACTAATAGAGTATTTTCAGGCTTTATTATTGGCCAATGT ACCGAAGCACTGATAATAGGTACTTTATGCTTTTTAGGTATGTTAGTATTAAGAATGCCATATGCTTTCTTAATAAGTGT TCTTGTTGGTACAACAAGTTTAATTCCTATTTTAGGAGCATTTATAGGAACAATACCTTCATTTTTCTTAATATTTATAA TAAATCCTATTAAGGCATTTTGGTTTATTGTATTTATATTCTGTCTTCAAAGAGTTGAAGGAGATTTAATTTATCCAAGA GTTGTAGGAGGATCTGTAGGATTATCATCCTTATGGGTAATGCTTGCAATTATGATTGGTGGTAGTGCCTTTGGATTTAT TGGAATGTTAGTGGGAGTTCCAACAGCAGCTGTTATATACTGCGTATTTGGAAGTGTTACTAATAAGAGATTAAGCAAAA AAGGTATAAAAATAGATGAAGAAGAAATAGAAGACAGTGGAAAAATTCACGTATAA
Upstream 100 bases:
>100_bases AACAATATGGTATATTTAAGTAGATATAAGTTATTTTCATTAATAATAAAATTATTTTTTTGAAAAGATGAAAAATATCT TAAAATAAGGAAGTGAAAAT
Downstream 100 bases:
>100_bases ATAATAAAAGAAGGAATTTTATCAAGACTTTATTATAAAGTAGATATATCAAAATAAAATCTAATAAAACTTACAAACAT ATTCGGAGAATTACTAGATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MFFNDKKLKGALIVVTYAIILHFVFMKYSTVFGGLGYITSLVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRS AKRPLAITVTIIVLVGAISAIILFVVPQLTSSVVKLTESIPTYLKSFEVNMNNYADSTVLLSKVWDQVMNTWQEILKTVT HLFGGIASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKKVMYAYLRGDIADKILEVGQTTNRVFSGFIIGQC TEALIIGTLCFLGMLVLRMPYAFLISVLVGTTSLIPILGAFIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPR VVGGSVGLSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIYCVFGSVTNKRLSKKGIKIDEEEIEDSGKIHV
Sequences:
>Translated_391_residues MFFNDKKLKGALIVVTYAIILHFVFMKYSTVFGGLGYITSLVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRS AKRPLAITVTIIVLVGAISAIILFVVPQLTSSVVKLTESIPTYLKSFEVNMNNYADSTVLLSKVWDQVMNTWQEILKTVT HLFGGIASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKKVMYAYLRGDIADKILEVGQTTNRVFSGFIIGQC TEALIIGTLCFLGMLVLRMPYAFLISVLVGTTSLIPILGAFIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPR VVGGSVGLSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIYCVFGSVTNKRLSKKGIKIDEEEIEDSGKIHV >Mature_391_residues MFFNDKKLKGALIVVTYAIILHFVFMKYSTVFGGLGYITSLVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRS AKRPLAITVTIIVLVGAISAIILFVVPQLTSSVVKLTESIPTYLKSFEVNMNNYADSTVLLSKVWDQVMNTWQEILKTVT HLFGGIASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKKVMYAYLRGDIADKILEVGQTTNRVFSGFIIGQC TEALIIGTLCFLGMLVLRMPYAFLISVLVGTTSLIPILGAFIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPR VVGGSVGLSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIYCVFGSVTNKRLSKKGIKIDEEEIEDSGKIHV
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
Organism=Escherichia coli, GI1788838, Length=352, Percent_Identity=22.7272727272727, Blast_Score=83, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 43222; Mature: 43222
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFNDKKLKGALIVVTYAIILHFVFMKYSTVFGGLGYITSLVKPLILGIAIAFVLNIPMK CCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH FFERKLFRNLENSKKSWVRSAKRPLAITVTIIVLVGAISAIILFVVPQLTSSVVKLTESI HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PTYLKSFEVNMNNYADSTVLLSKVWDQVMNTWQEILKTVTHLFGGIASYLVGLTVDVTTA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIDFCLAFVLAIYMLSSKEKLICQIKKVMYAYLRGDIADKILEVGQTTNRVFSGFIIGQC HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH TEALIIGTLCFLGMLVLRMPYAFLISVLVGTTSLIPILGAFIGTIPSFFLIFIINPIKAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WFIVFIFCLQRVEGDLIYPRVVGGSVGLSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIY HHHHHHHHHHHHCCCEECHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH CVFGSVTNKRLSKKGIKIDEEEIEDSGKIHV HHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC >Mature Secondary Structure MFFNDKKLKGALIVVTYAIILHFVFMKYSTVFGGLGYITSLVKPLILGIAIAFVLNIPMK CCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH FFERKLFRNLENSKKSWVRSAKRPLAITVTIIVLVGAISAIILFVVPQLTSSVVKLTESI HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PTYLKSFEVNMNNYADSTVLLSKVWDQVMNTWQEILKTVTHLFGGIASYLVGLTVDVTTA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIDFCLAFVLAIYMLSSKEKLICQIKKVMYAYLRGDIADKILEVGQTTNRVFSGFIIGQC HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH TEALIIGTLCFLGMLVLRMPYAFLISVLVGTTSLIPILGAFIGTIPSFFLIFIINPIKAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WFIVFIFCLQRVEGDLIYPRVVGGSVGLSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIY HHHHHHHHHHHHCCCEECHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH CVFGSVTNKRLSKKGIKIDEEEIEDSGKIHV HHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]