| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is epsH [H]
Identifier: 18309701
GI number: 18309701
Start: 893608
End: 894612
Strand: Direct
Name: epsH [H]
Synonym: CPE0719
Alternate gene names: 18309701
Gene position: 893608-894612 (Clockwise)
Preceding gene: 18309700
Following gene: 18309702
Centisome position: 29.48
GC content: 25.67
Gene sequence:
>1005_bases ATGGCATTAATGAGTGATAAGTTTTTAAGTATAGTAATTCCTGCATATAATTCAGAAAAGTATATTGAAAAAAATCTTAT GTTTTTATCAAGACAAACATCAAATAATTTTGAAGTGATAGTTGTTGATGATGGTTCAACAGATAATACCTGTGAAGTAA GTGAAGCTTGTTTAGAAAACTTTAAAATAAATCATAGAGTGATTAGATGTGAAGAAAATAGGGGACAGAGTGTTGCTAGA AATATTGGGATTAATTATTCAAGAGGAAAATATATCTTATTTTTAGATTCAGATGATTTTGCAGAGAATAATTTAGTTCA GATTTTAGAAAGAAATATGTTTAATGAACCTGATATAGTATTTTTTGATTATAAAAGAATCAAAGAGGGTGACAGTGTAA ATGTGAATATAGCTCAAAACTTTGAGTTTGGAAAAATAAAATCAGGGGAAGAAGTCTTTAATGCTTATAAGGATAATAAA ATAAGACTTTGGACTGGAAGTCTTGTCTATAATAAGGAGTTCTTAAATAAAAATAAGCTTAGATTTTTAGAAGGAGCTCA TGGGGCAGAGGATTTAAATTTTATATTTAAAGCACTTTTAAGTTCAAAGAAGGTTAGAGGAATAGAAGACAGTTTAGTAT TTTATTGTCAAAGGGGAGATTCTTTAACTAATAATCCAGACATATATAAGAATATAACTGTAGTAGAATCAATGGAGGAT GTAGCTAAATTTATTGATGAAAATAAATTAGATAAAAAGCTTAAAGAAGCTATAGAAAAAGAATTTACTTGTGAGCATAT TATGTATCAAATATTAGGATATTTAAATAGTGAAACAAAGAAAGATACTTTAAGTGTTCTTAAAAATAAAAATGTTAAAA AGTACTTAAAAAAAGCAACTATTAAAACAAATAGATATGGAAGAAGTATGTACACTTATATGAAGATGGCTGCATATTTT CCAAATTTATTTATAAAAACATATTTAAAAAATACAGGAAAATAG
Upstream 100 bases:
>100_bases TGCAATTGATTATGCTACTAATAAAATAAGAAATATTTTACTTTAAATTTTAAAACTATTTATAAGCTTAATTTAAAAAC TATAATGGAGTTGAAGTGAG
Downstream 100 bases:
>100_bases AGAAGTACATATTCTATTAAGGATAAAAGAAAATGTTATTAACAAAAAATTAACAATATGGTATATTTAAGTAGATATAA GTTATTTTCATTAATAATAA
Product: capsular polysaccharide biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MALMSDKFLSIVIPAYNSEKYIEKNLMFLSRQTSNNFEVIVVDDGSTDNTCEVSEACLENFKINHRVIRCEENRGQSVAR NIGINYSRGKYILFLDSDDFAENNLVQILERNMFNEPDIVFFDYKRIKEGDSVNVNIAQNFEFGKIKSGEEVFNAYKDNK IRLWTGSLVYNKEFLNKNKLRFLEGAHGAEDLNFIFKALLSSKKVRGIEDSLVFYCQRGDSLTNNPDIYKNITVVESMED VAKFIDENKLDKKLKEAIEKEFTCEHIMYQILGYLNSETKKDTLSVLKNKNVKKYLKKATIKTNRYGRSMYTYMKMAAYF PNLFIKTYLKNTGK
Sequences:
>Translated_334_residues MALMSDKFLSIVIPAYNSEKYIEKNLMFLSRQTSNNFEVIVVDDGSTDNTCEVSEACLENFKINHRVIRCEENRGQSVAR NIGINYSRGKYILFLDSDDFAENNLVQILERNMFNEPDIVFFDYKRIKEGDSVNVNIAQNFEFGKIKSGEEVFNAYKDNK IRLWTGSLVYNKEFLNKNKLRFLEGAHGAEDLNFIFKALLSSKKVRGIEDSLVFYCQRGDSLTNNPDIYKNITVVESMED VAKFIDENKLDKKLKEAIEKEFTCEHIMYQILGYLNSETKKDTLSVLKNKNVKKYLKKATIKTNRYGRSMYTYMKMAAYF PNLFIKTYLKNTGK >Mature_333_residues ALMSDKFLSIVIPAYNSEKYIEKNLMFLSRQTSNNFEVIVVDDGSTDNTCEVSEACLENFKINHRVIRCEENRGQSVARN IGINYSRGKYILFLDSDDFAENNLVQILERNMFNEPDIVFFDYKRIKEGDSVNVNIAQNFEFGKIKSGEEVFNAYKDNKI RLWTGSLVYNKEFLNKNKLRFLEGAHGAEDLNFIFKALLSSKKVRGIEDSLVFYCQRGDSLTNNPDIYKNITVVESMEDV AKFIDENKLDKKLKEAIEKEFTCEHIMYQILGYLNSETKKDTLSVLKNKNVKKYLKKATIKTNRYGRSMYTYMKMAAYFP NLFIKTYLKNTGK
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles. Required for biofilm maintenance [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1790044, Length=214, Percent_Identity=28.0373831775701, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1787259, Length=114, Percent_Identity=31.5789473684211, Blast_Score=62, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6325029, Length=99, Percent_Identity=41.4141414141414, Blast_Score=74, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 38848; Mature: 38717
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALMSDKFLSIVIPAYNSEKYIEKNLMFLSRQTSNNFEVIVVDDGSTDNTCEVSEACLEN CCCCCCCCEEEEEECCCCHHHHHHHHHHEEECCCCCEEEEEEECCCCCCCHHHHHHHHHC FKINHRVIRCEENRGQSVARNIGINYSRGKYILFLDSDDFAENNLVQILERNMFNEPDIV CCCCCEEEEEECCCCHHHHHHCCCEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEE FFDYKRIKEGDSVNVNIAQNFEFGKIKSGEEVFNAYKDNKIRLWTGSLVYNKEFLNKNKL EEEHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCEEEEEECCEEECHHHHCCCCE RFLEGAHGAEDLNFIFKALLSSKKVRGIEDSLVFYCQRGDSLTNNPDIYKNITVVESMED EEECCCCCCHHHHHHHHHHHCCCCCCCCCHHEEEEEECCCCCCCCCCHHCCHHHHHHHHH VAKFIDENKLDKKLKEAIEKEFTCEHIMYQILGYLNSETKKDTLSVLKNKNVKKYLKKAT HHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH IKTNRYGRSMYTYMKMAAYFPNLFIKTYLKNTGK HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ALMSDKFLSIVIPAYNSEKYIEKNLMFLSRQTSNNFEVIVVDDGSTDNTCEVSEACLEN CCCCCCCEEEEEECCCCHHHHHHHHHHEEECCCCCEEEEEEECCCCCCCHHHHHHHHHC FKINHRVIRCEENRGQSVARNIGINYSRGKYILFLDSDDFAENNLVQILERNMFNEPDIV CCCCCEEEEEECCCCHHHHHHCCCEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEE FFDYKRIKEGDSVNVNIAQNFEFGKIKSGEEVFNAYKDNKIRLWTGSLVYNKEFLNKNKL EEEHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCEEEEEECCEEECHHHHCCCCE RFLEGAHGAEDLNFIFKALLSSKKVRGIEDSLVFYCQRGDSLTNNPDIYKNITVVESMED EEECCCCCCHHHHHHHHHHHCCCCCCCCCHHEEEEEECCCCCCCCCCHHCCHHHHHHHHH VAKFIDENKLDKKLKEAIEKEFTCEHIMYQILGYLNSETKKDTLSVLKNKNVKKYLKKAT HHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH IKTNRYGRSMYTYMKMAAYFPNLFIKTYLKNTGK HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]