Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is epsH [H]

Identifier: 18309701

GI number: 18309701

Start: 893608

End: 894612

Strand: Direct

Name: epsH [H]

Synonym: CPE0719

Alternate gene names: 18309701

Gene position: 893608-894612 (Clockwise)

Preceding gene: 18309700

Following gene: 18309702

Centisome position: 29.48

GC content: 25.67

Gene sequence:

>1005_bases
ATGGCATTAATGAGTGATAAGTTTTTAAGTATAGTAATTCCTGCATATAATTCAGAAAAGTATATTGAAAAAAATCTTAT
GTTTTTATCAAGACAAACATCAAATAATTTTGAAGTGATAGTTGTTGATGATGGTTCAACAGATAATACCTGTGAAGTAA
GTGAAGCTTGTTTAGAAAACTTTAAAATAAATCATAGAGTGATTAGATGTGAAGAAAATAGGGGACAGAGTGTTGCTAGA
AATATTGGGATTAATTATTCAAGAGGAAAATATATCTTATTTTTAGATTCAGATGATTTTGCAGAGAATAATTTAGTTCA
GATTTTAGAAAGAAATATGTTTAATGAACCTGATATAGTATTTTTTGATTATAAAAGAATCAAAGAGGGTGACAGTGTAA
ATGTGAATATAGCTCAAAACTTTGAGTTTGGAAAAATAAAATCAGGGGAAGAAGTCTTTAATGCTTATAAGGATAATAAA
ATAAGACTTTGGACTGGAAGTCTTGTCTATAATAAGGAGTTCTTAAATAAAAATAAGCTTAGATTTTTAGAAGGAGCTCA
TGGGGCAGAGGATTTAAATTTTATATTTAAAGCACTTTTAAGTTCAAAGAAGGTTAGAGGAATAGAAGACAGTTTAGTAT
TTTATTGTCAAAGGGGAGATTCTTTAACTAATAATCCAGACATATATAAGAATATAACTGTAGTAGAATCAATGGAGGAT
GTAGCTAAATTTATTGATGAAAATAAATTAGATAAAAAGCTTAAAGAAGCTATAGAAAAAGAATTTACTTGTGAGCATAT
TATGTATCAAATATTAGGATATTTAAATAGTGAAACAAAGAAAGATACTTTAAGTGTTCTTAAAAATAAAAATGTTAAAA
AGTACTTAAAAAAAGCAACTATTAAAACAAATAGATATGGAAGAAGTATGTACACTTATATGAAGATGGCTGCATATTTT
CCAAATTTATTTATAAAAACATATTTAAAAAATACAGGAAAATAG

Upstream 100 bases:

>100_bases
TGCAATTGATTATGCTACTAATAAAATAAGAAATATTTTACTTTAAATTTTAAAACTATTTATAAGCTTAATTTAAAAAC
TATAATGGAGTTGAAGTGAG

Downstream 100 bases:

>100_bases
AGAAGTACATATTCTATTAAGGATAAAAGAAAATGTTATTAACAAAAAATTAACAATATGGTATATTTAAGTAGATATAA
GTTATTTTCATTAATAATAA

Product: capsular polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MALMSDKFLSIVIPAYNSEKYIEKNLMFLSRQTSNNFEVIVVDDGSTDNTCEVSEACLENFKINHRVIRCEENRGQSVAR
NIGINYSRGKYILFLDSDDFAENNLVQILERNMFNEPDIVFFDYKRIKEGDSVNVNIAQNFEFGKIKSGEEVFNAYKDNK
IRLWTGSLVYNKEFLNKNKLRFLEGAHGAEDLNFIFKALLSSKKVRGIEDSLVFYCQRGDSLTNNPDIYKNITVVESMED
VAKFIDENKLDKKLKEAIEKEFTCEHIMYQILGYLNSETKKDTLSVLKNKNVKKYLKKATIKTNRYGRSMYTYMKMAAYF
PNLFIKTYLKNTGK

Sequences:

>Translated_334_residues
MALMSDKFLSIVIPAYNSEKYIEKNLMFLSRQTSNNFEVIVVDDGSTDNTCEVSEACLENFKINHRVIRCEENRGQSVAR
NIGINYSRGKYILFLDSDDFAENNLVQILERNMFNEPDIVFFDYKRIKEGDSVNVNIAQNFEFGKIKSGEEVFNAYKDNK
IRLWTGSLVYNKEFLNKNKLRFLEGAHGAEDLNFIFKALLSSKKVRGIEDSLVFYCQRGDSLTNNPDIYKNITVVESMED
VAKFIDENKLDKKLKEAIEKEFTCEHIMYQILGYLNSETKKDTLSVLKNKNVKKYLKKATIKTNRYGRSMYTYMKMAAYF
PNLFIKTYLKNTGK
>Mature_333_residues
ALMSDKFLSIVIPAYNSEKYIEKNLMFLSRQTSNNFEVIVVDDGSTDNTCEVSEACLENFKINHRVIRCEENRGQSVARN
IGINYSRGKYILFLDSDDFAENNLVQILERNMFNEPDIVFFDYKRIKEGDSVNVNIAQNFEFGKIKSGEEVFNAYKDNKI
RLWTGSLVYNKEFLNKNKLRFLEGAHGAEDLNFIFKALLSSKKVRGIEDSLVFYCQRGDSLTNNPDIYKNITVVESMEDV
AKFIDENKLDKKLKEAIEKEFTCEHIMYQILGYLNSETKKDTLSVLKNKNVKKYLKKATIKTNRYGRSMYTYMKMAAYFP
NLFIKTYLKNTGK

Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles. Required for biofilm maintenance [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=214, Percent_Identity=28.0373831775701, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787259, Length=114, Percent_Identity=31.5789473684211, Blast_Score=62, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6325029, Length=99, Percent_Identity=41.4141414141414, Blast_Score=74, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38848; Mature: 38717

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALMSDKFLSIVIPAYNSEKYIEKNLMFLSRQTSNNFEVIVVDDGSTDNTCEVSEACLEN
CCCCCCCCEEEEEECCCCHHHHHHHHHHEEECCCCCEEEEEEECCCCCCCHHHHHHHHHC
FKINHRVIRCEENRGQSVARNIGINYSRGKYILFLDSDDFAENNLVQILERNMFNEPDIV
CCCCCEEEEEECCCCHHHHHHCCCEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
FFDYKRIKEGDSVNVNIAQNFEFGKIKSGEEVFNAYKDNKIRLWTGSLVYNKEFLNKNKL
EEEHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCEEEEEECCEEECHHHHCCCCE
RFLEGAHGAEDLNFIFKALLSSKKVRGIEDSLVFYCQRGDSLTNNPDIYKNITVVESMED
EEECCCCCCHHHHHHHHHHHCCCCCCCCCHHEEEEEECCCCCCCCCCHHCCHHHHHHHHH
VAKFIDENKLDKKLKEAIEKEFTCEHIMYQILGYLNSETKKDTLSVLKNKNVKKYLKKAT
HHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH
IKTNRYGRSMYTYMKMAAYFPNLFIKTYLKNTGK
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALMSDKFLSIVIPAYNSEKYIEKNLMFLSRQTSNNFEVIVVDDGSTDNTCEVSEACLEN
CCCCCCCEEEEEECCCCHHHHHHHHHHEEECCCCCEEEEEEECCCCCCCHHHHHHHHHC
FKINHRVIRCEENRGQSVARNIGINYSRGKYILFLDSDDFAENNLVQILERNMFNEPDIV
CCCCCEEEEEECCCCHHHHHHCCCEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
FFDYKRIKEGDSVNVNIAQNFEFGKIKSGEEVFNAYKDNKIRLWTGSLVYNKEFLNKNKL
EEEHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCEEEEEECCEEECHHHHCCCCE
RFLEGAHGAEDLNFIFKALLSSKKVRGIEDSLVFYCQRGDSLTNNPDIYKNITVVESMED
EEECCCCCCHHHHHHHHHHHCCCCCCCCCHHEEEEEECCCCCCCCCCHHCCHHHHHHHHH
VAKFIDENKLDKKLKEAIEKEFTCEHIMYQILGYLNSETKKDTLSVLKNKNVKKYLKKAT
HHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH
IKTNRYGRSMYTYMKMAAYFPNLFIKTYLKNTGK
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377 [H]