Click here to switch to the map view.

The map label for this gene is tISRso1

Identifier: 17548068

GI number: 17548068

Start: 3612040

End: 3612864

Strand: Reverse

Name: tISRso1

Synonym: RSc3351

Alternate gene names: NA

Gene position: 3612864-3612040 (Counterclockwise)

Preceding gene: 17548069

Following gene: 17548067

Centisome position: 97.21

GC content: 62.55

Gene sequence:

>825_bases
ATGTGGAAAAAAGAACATCGAGAACGCGAGGCGAAGCTGGGTCGCAAGACCAAGCGGTACCCAAGCGACCTGACGGATAT
CGAATGGGTCGCTGTGCAGCCGTTGCTGCCCCGCGCCGCCGTGCGAGGTCGGCGTCGGGAGTGCGACTTGAGGGAGGTGG
TCAACGCCTTGCGCTATCTTGTGCGAGCGGGCTGCGGTTGGCGCATGCTGCCTCACGACTTCCCGCCTTGGCAAACCGTG
TATTGGTGGTTTCGTCGGCTCATGCGTCGCTTCCTGTTCCGCACGCTGCACGACGTGGTGCTGATGTTGGACCGGGAGTT
GGCTGGGCGGCAGCCGTGCCCAAGTGCGGGCGTCATCGACAGCCAGACAGTCAAAGCGCCCTCGGCCGACAAGCGTGGCT
ACGACGCGGCCAAGAAAATCGTCGGGCGCAAGCGGCATATCGCGGTGGACACGGATGGACGGCTGCTGATGGTGAACCTG
ACACCGGCGGACATTGCTGATAGCACGGGTGCGCTGGCGGTGCTGGAAGCGGTGAAGAAGCGCTGGCCAGGCATAAAACA
CCTGTTCGCTGACGGTGCGTATGACCGCACAGCGCTGATGGACAAGGCATCGACCCTCGACTTCGTGGTTGAGGTGGTGC
GCCGGCACGAGCAGCAAACGGGCTTTGCCGTTCTGCCGCGCCGCTGGGTGGTCGAGCGCACCTTTGGATGGATGGTTCGC
TGGCGTCGACTCGTACGCGACTACGAACAGCGGGCAGACGTATCGGAAGCCATGATTCATATCGCGATGAGCGGCTTGCT
ACTGCGCAGAATCGCTCATCCTTGA

Upstream 100 bases:

>100_bases
CTGGGCCAAGGCAACCAAGCGGGATAATGGCCATCCCTCCGCCTGGGAGGAGACTTAGAGCCCGTTTGAAAATTCCCCGC
CGTTGTGGTGTAAAGGCGGG

Downstream 100 bases:

>100_bases
ATTTCCAAACGGGCTCTTAGAATGCACCGGTATCGTTTGCGCCGCATGCATCTCTTACAGGAGCAACCACAGACATGGCC
TATAAAAAAGCACTGGCGGC

Product: transposase

Products: NA

Alternate protein names: Transposase IS4 Family Protein; IS4 Family Transposase; Transposase IS5 Family Protein; Transposase And Inactivated Derivatives-Like Protein; IS5 Family Transposase; Transposase Of; LOW QUALITY PROTEIN Transposase; IS4 Insertion Sequence Transposase Protein; Transposase-Like Protein; Transposase Fragment; Transposase And Inactivated Derivatives-Like; Transposase Protein; ISXo3 Transposase ORF B; Transposase And Inactivated Derivatives; Transposase IS5 Family Protein-Like Protein; Family Transposase; Transposase IS4 Family; Transposase Is4 Family Protein; Transposon; IS4 Family Insertion Sequence Transposase Protein; Transposase Is4 Family; IS3/IS4 Family Insertion Sequence Transposase Protein; IS Transposase; ISPsy19 Transposase; Transposase IS5 Family; Isxo3 Transposase Protein; Insertion Sequence Transposase Truncated Protein

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MWKKEHREREAKLGRKTKRYPSDLTDIEWVAVQPLLPRAAVRGRRRECDLREVVNALRYLVRAGCGWRMLPHDFPPWQTV
YWWFRRLMRRFLFRTLHDVVLMLDRELAGRQPCPSAGVIDSQTVKAPSADKRGYDAAKKIVGRKRHIAVDTDGRLLMVNL
TPADIADSTGALAVLEAVKKRWPGIKHLFADGAYDRTALMDKASTLDFVVEVVRRHEQQTGFAVLPRRWVVERTFGWMVR
WRRLVRDYEQRADVSEAMIHIAMSGLLLRRIAHP

Sequences:

>Translated_274_residues
MWKKEHREREAKLGRKTKRYPSDLTDIEWVAVQPLLPRAAVRGRRRECDLREVVNALRYLVRAGCGWRMLPHDFPPWQTV
YWWFRRLMRRFLFRTLHDVVLMLDRELAGRQPCPSAGVIDSQTVKAPSADKRGYDAAKKIVGRKRHIAVDTDGRLLMVNL
TPADIADSTGALAVLEAVKKRWPGIKHLFADGAYDRTALMDKASTLDFVVEVVRRHEQQTGFAVLPRRWVVERTFGWMVR
WRRLVRDYEQRADVSEAMIHIAMSGLLLRRIAHP
>Mature_274_residues
MWKKEHREREAKLGRKTKRYPSDLTDIEWVAVQPLLPRAAVRGRRRECDLREVVNALRYLVRAGCGWRMLPHDFPPWQTV
YWWFRRLMRRFLFRTLHDVVLMLDRELAGRQPCPSAGVIDSQTVKAPSADKRGYDAAKKIVGRKRHIAVDTDGRLLMVNL
TPADIADSTGALAVLEAVKKRWPGIKHLFADGAYDRTALMDKASTLDFVVEVVRRHEQQTGFAVLPRRWVVERTFGWMVR
WRRLVRDYEQRADVSEAMIHIAMSGLLLRRIAHP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31943; Mature: 31943

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKKEHREREAKLGRKTKRYPSDLTDIEWVAVQPLLPRAAVRGRRRECDLREVVNALRYL
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHEECCCHHHHHHHCCCCCCCCHHHHHHHHHHH
VRAGCGWRMLPHDFPPWQTVYWWFRRLMRRFLFRTLHDVVLMLDRELAGRQPCPSAGVID
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
SQTVKAPSADKRGYDAAKKIVGRKRHIAVDTDGRLLMVNLTPADIADSTGALAVLEAVKK
CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCEEEEECCCHHHCCCCHHHHHHHHHHH
RWPGIKHLFADGAYDRTALMDKASTLDFVVEVVRRHEQQTGFAVLPRRWVVERTFGWMVR
HCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
WRRLVRDYEQRADVSEAMIHIAMSGLLLRRIAHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWKKEHREREAKLGRKTKRYPSDLTDIEWVAVQPLLPRAAVRGRRRECDLREVVNALRYL
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHEECCCHHHHHHHCCCCCCCCHHHHHHHHHHH
VRAGCGWRMLPHDFPPWQTVYWWFRRLMRRFLFRTLHDVVLMLDRELAGRQPCPSAGVID
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
SQTVKAPSADKRGYDAAKKIVGRKRHIAVDTDGRLLMVNLTPADIADSTGALAVLEAVKK
CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCEEEEECCCHHHCCCCHHHHHHHHHHH
RWPGIKHLFADGAYDRTALMDKASTLDFVVEVVRRHEQQTGFAVLPRRWVVERTFGWMVR
HCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
WRRLVRDYEQRADVSEAMIHIAMSGLLLRRIAHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA