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The map label for this gene is ompW [H]

Identifier: 17548067

GI number: 17548067

Start: 3611240

End: 3611965

Strand: Reverse

Name: ompW [H]

Synonym: RSc3350

Alternate gene names: 17548067

Gene position: 3611965-3611240 (Counterclockwise)

Preceding gene: 17548068

Following gene: 17548065

Centisome position: 97.19

GC content: 64.46

Gene sequence:

>726_bases
ATGGCCTATAAAAAAGCACTGGCGGCCGCCGCCGGGATGATCCTTGCCACTGCCGCCCACGCCCAAAGCGCGGGGAGCAA
CATCGTCAGCCTCGGCTGGTTCCGCGTCATGCCGAACAGCTCGAGCGACCCGCTGCAGATCGACAGCGTGGGTGGTGTGC
CGCTCAACCGGTCGGTACCGAACACGGGCGCCAAGATCAAGGACGCCGATACGCTCGGCCTCGCCTTCACGCACTTCTTC
ACCGACAACCTGGCGGTCGAACTGGTCGGCGGCATCCCGCCGCGCCACAAGATCGAGGGCACCGATTCCTTCGCGCGCTA
CGGCCAGATCGGCTCGGCCAAGCAATGGAGCCCGACCGTGCTGGCCAAGTGGTACTTCGGCGGCGCGGACAGCAAGTTCC
GCCCCTATGTCGGCGCAGGCCTGAACTACACCTGGTTCACCGACGAGAAGATCACCAACAGCGCGTTCCAGACCCAGGTG
CTGGGCAACGGCTTCCCGAGCACGAGCACCGTGTCGACCGACAGCTCGCTCAACCCGGTGGTGAGCGCGGGCGCCACGTA
CGCCATCACCAAGGACTGGTTCCTTGGCCTGTCGGTGTCGTACCTGCCGCTGAAGACCACGGCCAAGATCGATACCACGC
TGGCCAACGGCCAGCATGCCGTGACCGAAGCGAAGATCAAGATCAACCCGATCGTGACCTTCCTGTCGGTCGGCTACCGT
TTCTGA

Upstream 100 bases:

>100_bases
TACTGCGCAGAATCGCTCATCCTTGAATTTCCAAACGGGCTCTTAGAATGCACCGGTATCGTTTGCGCCGCATGCATCTC
TTACAGGAGCAACCACAGAC

Downstream 100 bases:

>100_bases
GCGGCGCCGCGCCCACAAAAAAGGCGTGCCATGGCGGCACGCCTTTTTTTATTGGCCCGACGGCTCAGGCAACAGCCTTG
ACCGGATAGCCGGCCTGCTC

Product: outer membrane W signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MAYKKALAAAAGMILATAAHAQSAGSNIVSLGWFRVMPNSSSDPLQIDSVGGVPLNRSVPNTGAKIKDADTLGLAFTHFF
TDNLAVELVGGIPPRHKIEGTDSFARYGQIGSAKQWSPTVLAKWYFGGADSKFRPYVGAGLNYTWFTDEKITNSAFQTQV
LGNGFPSTSTVSTDSSLNPVVSAGATYAITKDWFLGLSVSYLPLKTTAKIDTTLANGQHAVTEAKIKINPIVTFLSVGYR
F

Sequences:

>Translated_241_residues
MAYKKALAAAAGMILATAAHAQSAGSNIVSLGWFRVMPNSSSDPLQIDSVGGVPLNRSVPNTGAKIKDADTLGLAFTHFF
TDNLAVELVGGIPPRHKIEGTDSFARYGQIGSAKQWSPTVLAKWYFGGADSKFRPYVGAGLNYTWFTDEKITNSAFQTQV
LGNGFPSTSTVSTDSSLNPVVSAGATYAITKDWFLGLSVSYLPLKTTAKIDTTLANGQHAVTEAKIKINPIVTFLSVGYR
F
>Mature_240_residues
AYKKALAAAAGMILATAAHAQSAGSNIVSLGWFRVMPNSSSDPLQIDSVGGVPLNRSVPNTGAKIKDADTLGLAFTHFFT
DNLAVELVGGIPPRHKIEGTDSFARYGQIGSAKQWSPTVLAKWYFGGADSKFRPYVGAGLNYTWFTDEKITNSAFQTQVL
GNGFPSTSTVSTDSSLNPVVSAGATYAITKDWFLGLSVSYLPLKTTAKIDTTLANGQHAVTEAKIKINPIVTFLSVGYRF

Specific function: Acts as a receptor for colicin S4 [H]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=234, Percent_Identity=34.1880341880342, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 25633; Mature: 25502

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYKKALAAAAGMILATAAHAQSAGSNIVSLGWFRVMPNSSSDPLQIDSVGGVPLNRSVP
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCC
NTGAKIKDADTLGLAFTHFFTDNLAVELVGGIPPRHKIEGTDSFARYGQIGSAKQWSPTV
CCCCEECCCCHHHEEEEEHHHCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCEE
LAKWYFGGADSKFRPYVGAGLNYTWFTDEKITNSAFQTQVLGNGFPSTSTVSTDSSLNPV
EEEEEECCCCCCCCCEECCCCEEEEECCCHHCCHHHHHHHHCCCCCCCCEECCCCCCCHH
VSAGATYAITKDWFLGLSVSYLPLKTTAKIDTTLANGQHAVTEAKIKINPIVTFLSVGYR
HHCCCEEEEECCEEEECEEEEEEEEECCEEEEEECCCCEEEEEEEEEEHHHEEEEHHCCC
F
C
>Mature Secondary Structure 
AYKKALAAAAGMILATAAHAQSAGSNIVSLGWFRVMPNSSSDPLQIDSVGGVPLNRSVP
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCC
NTGAKIKDADTLGLAFTHFFTDNLAVELVGGIPPRHKIEGTDSFARYGQIGSAKQWSPTV
CCCCEECCCCHHHEEEEEHHHCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCEE
LAKWYFGGADSKFRPYVGAGLNYTWFTDEKITNSAFQTQVLGNGFPSTSTVSTDSSLNPV
EEEEEECCCCCCCCCEECCCCEEEEECCCHHCCHHHHHHHHCCCCCCCCEECCCCCCCHH
VSAGATYAITKDWFLGLSVSYLPLKTTAKIDTTLANGQHAVTEAKIKINPIVTFLSVGYR
HHCCCEEEEECCEEEECEEEEEEEEECCEEEEEECCCCEEEEEEEEEEHHHEEEEHHCCC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 9629924; 10348872 [H]