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The map label for this gene is ybdK [C]

Identifier: 17548015

GI number: 17548015

Start: 3554940

End: 3556073

Strand: Reverse

Name: ybdK [C]

Synonym: RSc3298

Alternate gene names: 17548015

Gene position: 3556073-3554940 (Counterclockwise)

Preceding gene: 17548016

Following gene: 17548009

Centisome position: 95.69

GC content: 67.9

Gene sequence:

>1134_bases
ATGTCCCTCGAACCGTTCGCCAAATCCGAGGCGCTGACCTTCGGCGTGGAGCTGGAGCTGCAACTCGTCAATCGGCACGA
CTATGACCTCGCGTCCGCCTCGGCCGACCTGCTGCGCATGCTCAGGGGCAAGGAGACGCCCGGCGACATCAAGCCGGAGA
TCACCGAGTCGATGATCGAGATCGCCACCGGCATCTGCCACAGCCACGACGAAGCGCTGTGGCAGATGCGCGAGATCCGC
GACCGCATGGTCGAGGCGGCGGTGCCGCTCAACATCGGCATCTGCGGCGGCGGCACGCATCCGTTCCAGCAATGGAGCCA
GCGCACCATCTCGGCCTCGCCGCGCTACCAGTACATCTCGGAGCTGTACGGCTATCTCGCCAAGCAGTTCACCGTGTTCG
GCCAGCACGTGCACCTGGGCTGCCCCAGCCCCGACGATGCGCTGTACCTGCTGCACGCCATGTCGCGCTACGTGCCGCAC
TTCATCGCGCTGGCCGCGTCCTCGCCGTTCGTGCAGGGGGTGGATACCGGGTTCGCCTCGGCGCGCCTGAATTCGGTGAG
TGCCTTCCCGATGTCGGGCCGCGCGCCGTTCGTGCTCACGTGGGATGCCTTTGTCGCGTACTTCGAGAAGATGCGCGCCA
CCGGCGTGATCGAGAGCATGAAGGACTTTTACTGGGACATCCGCCCCAAGCCCGAATTCGGCACCATCGAAGTCCGCGTG
ATGGATACCCCGCTGACGGTGGAGCGCGCCGCCGCCGTGGCCGCCTACATCCAGGCGCTGGGCCGCTGGCTGCTGCTCGA
CCGGCCGTTCGTGCCCACCGAGGACGATTACCTGGTCTACACCTTCAACCGCTTCCAGGCCTGCCGCTTCGGGCTGGTGG
GCGAATACGTCGATCCGGCCAGCGGACAGCGCGGCGCCCTGGCCGACCACATCCTGGAGACCAGCAAGCTGCTCGCACCG
CACGCGGAGGCGCTGGCCTCCGAAGGCGCGCTCGACATGGTGCGCGAAGTGGTGGAGCGGCGCGACAGCGACGCGGAGTG
GATTCGCGCCACCGAGGGCGAGACCCGCAACCTGCACGAGACCGTGCGGCGCGGCTGCGGACGCTGGGCGCAGGTGGCGT
CGCTGCCCGCGTAG

Upstream 100 bases:

>100_bases
GCACGCTGGCCATCCAGCAGATCGCCGCACCGATCCTGACCACGCGCGCGTTGCGCTGGGCGGGCGAGGTGCGGCAGGAA
GAAGGGAGGCGTTGACCCTC

Downstream 100 bases:

>100_bases
GCTGCGGGCGCTCGGCCGGCGTCGCATGCGGGCCGGGTCCGGCCGCTGCTCGCGCCTGATGGCGGCCTCCCGCGCAGGCG
GATCGGAGCCGCGCCGGTGC

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSLEPFAKSEALTFGVELELQLVNRHDYDLASASADLLRMLRGKETPGDIKPEITESMIEIATGICHSHDEALWQMREIR
DRMVEAAVPLNIGICGGGTHPFQQWSQRTISASPRYQYISELYGYLAKQFTVFGQHVHLGCPSPDDALYLLHAMSRYVPH
FIALAASSPFVQGVDTGFASARLNSVSAFPMSGRAPFVLTWDAFVAYFEKMRATGVIESMKDFYWDIRPKPEFGTIEVRV
MDTPLTVERAAAVAAYIQALGRWLLLDRPFVPTEDDYLVYTFNRFQACRFGLVGEYVDPASGQRGALADHILETSKLLAP
HAEALASEGALDMVREVVERRDSDAEWIRATEGETRNLHETVRRGCGRWAQVASLPA

Sequences:

>Translated_377_residues
MSLEPFAKSEALTFGVELELQLVNRHDYDLASASADLLRMLRGKETPGDIKPEITESMIEIATGICHSHDEALWQMREIR
DRMVEAAVPLNIGICGGGTHPFQQWSQRTISASPRYQYISELYGYLAKQFTVFGQHVHLGCPSPDDALYLLHAMSRYVPH
FIALAASSPFVQGVDTGFASARLNSVSAFPMSGRAPFVLTWDAFVAYFEKMRATGVIESMKDFYWDIRPKPEFGTIEVRV
MDTPLTVERAAAVAAYIQALGRWLLLDRPFVPTEDDYLVYTFNRFQACRFGLVGEYVDPASGQRGALADHILETSKLLAP
HAEALASEGALDMVREVVERRDSDAEWIRATEGETRNLHETVRRGCGRWAQVASLPA
>Mature_376_residues
SLEPFAKSEALTFGVELELQLVNRHDYDLASASADLLRMLRGKETPGDIKPEITESMIEIATGICHSHDEALWQMREIRD
RMVEAAVPLNIGICGGGTHPFQQWSQRTISASPRYQYISELYGYLAKQFTVFGQHVHLGCPSPDDALYLLHAMSRYVPHF
IALAASSPFVQGVDTGFASARLNSVSAFPMSGRAPFVLTWDAFVAYFEKMRATGVIESMKDFYWDIRPKPEFGTIEVRVM
DTPLTVERAAAVAAYIQALGRWLLLDRPFVPTEDDYLVYTFNRFQACRFGLVGEYVDPASGQRGALADHILETSKLLAPH
AEALASEGALDMVREVVERRDSDAEWIRATEGETRNLHETVRRGCGRWAQVASLPA

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=370, Percent_Identity=46.7567567567568, Blast_Score=355, Evalue=3e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_RALSO (Q8XU95)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_521417.1
- ProteinModelPortal:   Q8XU95
- SMR:   Q8XU95
- GeneID:   1222162
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc3298
- NMPDR:   fig|267608.1.peg.3296
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- ProtClustDB:   PRK13516
- BioCyc:   RSOL267608:RSC3298-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 42124; Mature: 41993

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEPFAKSEALTFGVELELQLVNRHDYDLASASADLLRMLRGKETPGDIKPEITESMIE
CCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
IATGICHSHDEALWQMREIRDRMVEAAVPLNIGICGGGTHPFQQWSQRTISASPRYQYIS
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHH
ELYGYLAKQFTVFGQHVHLGCPSPDDALYLLHAMSRYVPHFIALAASSPFVQGVDTGFAS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHH
ARLNSVSAFPMSGRAPFVLTWDAFVAYFEKMRATGVIESMKDFYWDIRPKPEFGTIEVRV
HHHCCCEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
MDTPLTVERAAAVAAYIQALGRWLLLDRPFVPTEDDYLVYTFNRFQACRFGLVGEYVDPA
ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCC
SGQRGALADHILETSKLLAPHAEALASEGALDMVREVVERRDSDAEWIRATEGETRNLHE
CCCCCHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCCCHHEECCCCCCCHHHH
TVRRGCGRWAQVASLPA
HHHHHCCHHHHHHCCCC
>Mature Secondary Structure 
SLEPFAKSEALTFGVELELQLVNRHDYDLASASADLLRMLRGKETPGDIKPEITESMIE
CCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
IATGICHSHDEALWQMREIRDRMVEAAVPLNIGICGGGTHPFQQWSQRTISASPRYQYIS
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHH
ELYGYLAKQFTVFGQHVHLGCPSPDDALYLLHAMSRYVPHFIALAASSPFVQGVDTGFAS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHH
ARLNSVSAFPMSGRAPFVLTWDAFVAYFEKMRATGVIESMKDFYWDIRPKPEFGTIEVRV
HHHCCCEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
MDTPLTVERAAAVAAYIQALGRWLLLDRPFVPTEDDYLVYTFNRFQACRFGLVGEYVDPA
ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCC
SGQRGALADHILETSKLLAPHAEALASEGALDMVREVVERRDSDAEWIRATEGETRNLHE
CCCCCHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCCCHHEECCCCCCCHHHH
TVRRGCGRWAQVASLPA
HHHHHCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11823852