| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yiaH [H]
Identifier: 17548009
GI number: 17548009
Start: 3544090
End: 3545100
Strand: Reverse
Name: yiaH [H]
Synonym: RSc3292
Alternate gene names: 17548009
Gene position: 3545100-3544090 (Counterclockwise)
Preceding gene: 17548015
Following gene: 17548006
Centisome position: 95.39
GC content: 54.6
Gene sequence:
>1011_bases ATGGCTTGGCTTGACGCGGCGAGAGTGATTTCCATCTTTGCGGTTGTCTTTCTGCACATATCGGCATCCGTTGTGACTGA AGCGGATTTTGGTTCGTTGACCTGGTGGCACGGAAATATCTATGACTCGCTGGTTCGCTGGTGCGTGCCGGTTTTCGTCA TGATCAGCGGCGCGTTGCTGCTGGATGAAAGCCGGGTGGAAAACGCGGCCGCCTTCTACAGGCGGCGGGTCAAGAGAATC GTGCTGCCCCTGATGTTCTGGACGATTGCCTTTATCTTCTGGAATGCCATCAAGGCCAGGTTCTCGGGAGCGGAATTCGG CTTGGCGGAGGCCGTGAAGAGCGTGGCGAGAGGGAAGCCCCACTACCACATGTGGTTCCTGTTCATGATCGTCGGCCTGT ACTTATTTACCCCGCTGATCCGGACGCTGGTCAGGCATTCCAAGCGAAGCGAGCTGTGGTTCTTTGTCGCCGTGATGTTC TTCTTTTCCGCCCTGGATGAGCTGTATGGCGCGTTCTCCGACGATGATGGCGAGGTTTTCCTATTCTGGTTTCTCCCCTA CGTGCCCTATTTCATCTGCGGGCACCTGATTGCCACCAGCAAACGGGATGGCGGGAAACTTGTTTCCCTGATGGTGTTTG TCGCATCGGTTTTTCTGACGGCGGTGGGGTGCTATTTTCTGGCCCACAGGCAAGGGCTTGATAGGGGCCTCTATTTCTAT GGCTATCTCAGCGTCTCGGTCATACCGATGTCCATCGCGTTGATGTGGCTGCTGAAATCGCTCAGTTTCAGCGAGCCGGT TGCCGAGCGACTGGGTGTGGTGTCTGCCCTGACGCTTGGCATCTATCTGGTGCACCCGGTGTTCCTGGAGTCGGTCCGGT TTTTTTATTTCAAGGCGAAGGATTATTATCCCTTGCTATCGGTACCGGTTCTGTCGGTGCTGATATTTGGCGGATCCCTG ATGTTTGCTTTTGTGCTGCGAAAAATGCCTTACCTAAAGAGGGTGATATAG
Upstream 100 bases:
>100_bases GGTCTCATTTTATGTTGCGGGATGCGCTTGGAAATGTGGGTTACTACACTGACTTCGGCGCCTTCCCCAATGAGTGATGA TTTTAAAAAAGGGAGATTAG
Downstream 100 bases:
>100_bases GTCGAGGGTTTTTGCACCAGGAAAGGCGCCATCCAACAGGAACAGCGGGCCGTTTGCCTGGGCTTTCGCAGGAAACCGAC GGCTTAGCCGTTCCTATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MAWLDAARVISIFAVVFLHISASVVTEADFGSLTWWHGNIYDSLVRWCVPVFVMISGALLLDESRVENAAAFYRRRVKRI VLPLMFWTIAFIFWNAIKARFSGAEFGLAEAVKSVARGKPHYHMWFLFMIVGLYLFTPLIRTLVRHSKRSELWFFVAVMF FFSALDELYGAFSDDDGEVFLFWFLPYVPYFICGHLIATSKRDGGKLVSLMVFVASVFLTAVGCYFLAHRQGLDRGLYFY GYLSVSVIPMSIALMWLLKSLSFSEPVAERLGVVSALTLGIYLVHPVFLESVRFFYFKAKDYYPLLSVPVLSVLIFGGSL MFAFVLRKMPYLKRVI
Sequences:
>Translated_336_residues MAWLDAARVISIFAVVFLHISASVVTEADFGSLTWWHGNIYDSLVRWCVPVFVMISGALLLDESRVENAAAFYRRRVKRI VLPLMFWTIAFIFWNAIKARFSGAEFGLAEAVKSVARGKPHYHMWFLFMIVGLYLFTPLIRTLVRHSKRSELWFFVAVMF FFSALDELYGAFSDDDGEVFLFWFLPYVPYFICGHLIATSKRDGGKLVSLMVFVASVFLTAVGCYFLAHRQGLDRGLYFY GYLSVSVIPMSIALMWLLKSLSFSEPVAERLGVVSALTLGIYLVHPVFLESVRFFYFKAKDYYPLLSVPVLSVLIFGGSL MFAFVLRKMPYLKRVI >Mature_335_residues AWLDAARVISIFAVVFLHISASVVTEADFGSLTWWHGNIYDSLVRWCVPVFVMISGALLLDESRVENAAAFYRRRVKRIV LPLMFWTIAFIFWNAIKARFSGAEFGLAEAVKSVARGKPHYHMWFLFMIVGLYLFTPLIRTLVRHSKRSELWFFVAVMFF FSALDELYGAFSDDDGEVFLFWFLPYVPYFICGHLIATSKRDGGKLVSLMVFVASVFLTAVGCYFLAHRQGLDRGLYFYG YLSVSVIPMSIALMWLLKSLSFSEPVAERLGVVSALTLGIYLVHPVFLESVRFFYFKAKDYYPLLSVPVLSVLIFGGSLM FAFVLRKMPYLKRVI
Specific function: Unknown
COG id: COG3274
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acyltransferase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1789984, Length=319, Percent_Identity=26.9592476489028, Blast_Score=74, Evalue=9e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002656 [H]
Pfam domain/function: PF01757 Acyl_transf_3 [H]
EC number: NA
Molecular weight: Translated: 38465; Mature: 38334
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWLDAARVISIFAVVFLHISASVVTEADFGSLTWWHGNIYDSLVRWCVPVFVMISGALL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH LDESRVENAAAFYRRRVKRIVLPLMFWTIAFIFWNAIKARFSGAEFGLAEAVKSVARGKP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC HYHMWFLFMIVGLYLFTPLIRTLVRHSKRSELWFFVAVMFFFSALDELYGAFSDDDGEVF CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE LFWFLPYVPYFICGHLIATSKRDGGKLVSLMVFVASVFLTAVGCYFLAHRQGLDRGLYFY EHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH GYLSVSVIPMSIALMWLLKSLSFSEPVAERLGVVSALTLGIYLVHPVFLESVRFFYFKAK HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC DYYPLLSVPVLSVLIFGGSLMFAFVLRKMPYLKRVI CCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCC >Mature Secondary Structure AWLDAARVISIFAVVFLHISASVVTEADFGSLTWWHGNIYDSLVRWCVPVFVMISGALL CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH LDESRVENAAAFYRRRVKRIVLPLMFWTIAFIFWNAIKARFSGAEFGLAEAVKSVARGKP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC HYHMWFLFMIVGLYLFTPLIRTLVRHSKRSELWFFVAVMFFFSALDELYGAFSDDDGEVF CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE LFWFLPYVPYFICGHLIATSKRDGGKLVSLMVFVASVFLTAVGCYFLAHRQGLDRGLYFY EHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH GYLSVSVIPMSIALMWLLKSLSFSEPVAERLGVVSALTLGIYLVHPVFLESVRFFYFKAK HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC DYYPLLSVPVLSVLIFGGSLMFAFVLRKMPYLKRVI CCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]