| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17548002
Identifier: 17548002
GI number: 17548002
Start: 3536624
End: 3537721
Strand: Direct
Name: 17548002
Synonym: RSc3285
Alternate gene names: NA
Gene position: 3536624-3537721 (Clockwise)
Preceding gene: 17548000
Following gene: 17548004
Centisome position: 95.16
GC content: 70.58
Gene sequence:
>1098_bases ATGTGGAAGACACGGGTACGCGGCGGTCTGCGCACATTGCACTGCGCAGTCGCCATGGTGGCGTTGACAGCACATGCGCA AAGCGGCCCACCGCTGGTGGTCGGCCAGTTGACCGAGCGCGGCGGGGCGCAGGCGGATTTCGCGCGCGATTTCATGGCCG GCGCCAAGGTGGCCTTCGATGCCGCCAACCAGGCGGGCGGCATCCGTGGCCGGCGCATCACGCTGGTCCGCCGTGAAGTC GACGTGGCCGAGGCCGTCCCGCAGGCCGTCGAGCTGATCGAGCGTGACCACGTGGAAGTGCTGTTCGGCGTCAGCGAGCG GCTGCTGAGCGCGCTGGCGGCCACGCCCGAGATCGTGCGGCGCGATGTGCCGCTGCTGGCGCCACTGTCGGGCGCCACCT CCAGCGCAGGCAATGTCTGGTTCACCCGGCCCGATTACGACAGCGAGATCGTCGCCGCGCACAACCGGCTGCGCCAGTTC GGCATGCGGCGCATCGCGCTGGTGACGGCCGCGAGCTTCGATCCGCAACTCGGCGCGCGCCTGCGCAGCGCCCTGGCCAG CGACGACAGCGCCGAAACGCTCGACCTCTACACGCTCACCGGCGACCCCGGCGACCTGGCCGCCCGCATCGCGCCGACCA AGCCCACCGCCGTCATCGTCGCCGGCGATACGCTCGCCTACGCCAGCGTGGGCCGCGCCCTGGCGCAACGCGGGTGGTAC GGGTTCCTGGTCGGGCTGTCGTCGGTCAATCCGCAGGTGGCGCGCGAAATCCTGGGCAACGGCTACAGCGGCGGCATGCT GCTCGCGCAGACCGTGCCCAACCCGGCCGGCGGCGGCCTGAAGATCACACGCGAGCACATCGCGCGGATGAAGCAGTTCC TGGACGAGCCGCCCTCCACCGCGACGCTGTCGGGCTACATCGCGGCCAGCTTCCTGATCCAGGCGATCAGCGCCGCGGGC GGCAAGGCGAGCGGCCCGGAACTGCGGCGGGCGCTGCAGTCGCGCGTCGATCTCGGCGGGTTTACGCTGGACTTCACAAA GGGAAACCGGGGCAGCGCGTTCGTGGACCTGAACTACATCCAGGGCACCTCCAACTGA
Upstream 100 bases:
>100_bases TCACAGATGCGGCCCTACCATCGCCGATCGGCGCCAGCCCGCCCGCACGGCGGCCAACAAGAACAACCGGCGCCATCGGA CCATCCTTGGGGGGAGCGAG
Downstream 100 bases:
>100_bases ACACCGGCGTGCGCCGGGCCTACTGCAATGCCGGGCCCGGCACGACGGACGCGCCCGGGATGCCCAGCGCGGCACAGGTC GACGCGTCGATGTCGATCCA
Product: Leu/Ile/Val-binding signal peptide protein
Products: NA
Alternate protein names: ABC Branched-Chain Amino Acid Transporters; ABC Branched-Chain Amino Acid Transporter; ABC-Type Transporter Periplasmic Component
Number of amino acids: Translated: 365; Mature: 365
Protein sequence:
>365_residues MWKTRVRGGLRTLHCAVAMVALTAHAQSGPPLVVGQLTERGGAQADFARDFMAGAKVAFDAANQAGGIRGRRITLVRREV DVAEAVPQAVELIERDHVEVLFGVSERLLSALAATPEIVRRDVPLLAPLSGATSSAGNVWFTRPDYDSEIVAAHNRLRQF GMRRIALVTAASFDPQLGARLRSALASDDSAETLDLYTLTGDPGDLAARIAPTKPTAVIVAGDTLAYASVGRALAQRGWY GFLVGLSSVNPQVAREILGNGYSGGMLLAQTVPNPAGGGLKITREHIARMKQFLDEPPSTATLSGYIAASFLIQAISAAG GKASGPELRRALQSRVDLGGFTLDFTKGNRGSAFVDLNYIQGTSN
Sequences:
>Translated_365_residues MWKTRVRGGLRTLHCAVAMVALTAHAQSGPPLVVGQLTERGGAQADFARDFMAGAKVAFDAANQAGGIRGRRITLVRREV DVAEAVPQAVELIERDHVEVLFGVSERLLSALAATPEIVRRDVPLLAPLSGATSSAGNVWFTRPDYDSEIVAAHNRLRQF GMRRIALVTAASFDPQLGARLRSALASDDSAETLDLYTLTGDPGDLAARIAPTKPTAVIVAGDTLAYASVGRALAQRGWY GFLVGLSSVNPQVAREILGNGYSGGMLLAQTVPNPAGGGLKITREHIARMKQFLDEPPSTATLSGYIAASFLIQAISAAG GKASGPELRRALQSRVDLGGFTLDFTKGNRGSAFVDLNYIQGTSN >Mature_365_residues MWKTRVRGGLRTLHCAVAMVALTAHAQSGPPLVVGQLTERGGAQADFARDFMAGAKVAFDAANQAGGIRGRRITLVRREV DVAEAVPQAVELIERDHVEVLFGVSERLLSALAATPEIVRRDVPLLAPLSGATSSAGNVWFTRPDYDSEIVAAHNRLRQF GMRRIALVTAASFDPQLGARLRSALASDDSAETLDLYTLTGDPGDLAARIAPTKPTAVIVAGDTLAYASVGRALAQRGWY GFLVGLSSVNPQVAREILGNGYSGGMLLAQTVPNPAGGGLKITREHIARMKQFLDEPPSTATLSGYIAASFLIQAISAAG GKASGPELRRALQSRVDLGGFTLDFTKGNRGSAFVDLNYIQGTSN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38533; Mature: 38533
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWKTRVRGGLRTLHCAVAMVALTAHAQSGPPLVVGQLTERGGAQADFARDFMAGAKVAFD CCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCHHEEE AANQAGGIRGRRITLVRREVDVAEAVPQAVELIERDHVEVLFGVSERLLSALAATPEIVR CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHH RDVPLLAPLSGATSSAGNVWFTRPDYDSEIVAAHNRLRQFGMRRIALVTAASFDPQLGAR CCCCCEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHH LRSALASDDSAETLDLYTLTGDPGDLAARIAPTKPTAVIVAGDTLAYASVGRALAQRGWY HHHHHCCCCCCCEEEEEEEECCCCHHEEEECCCCCCEEEEECCHHHHHHHHHHHHHCCCE GFLVGLSSVNPQVAREILGNGYSGGMLLAQTVPNPAGGGLKITREHIARMKQFLDEPPST EEEEECCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHCCCCCC ATLSGYIAASFLIQAISAAGGKASGPELRRALQSRVDLGGFTLDFTKGNRGSAFVDLNYI CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEE QGTSN CCCCC >Mature Secondary Structure MWKTRVRGGLRTLHCAVAMVALTAHAQSGPPLVVGQLTERGGAQADFARDFMAGAKVAFD CCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCHHEEE AANQAGGIRGRRITLVRREVDVAEAVPQAVELIERDHVEVLFGVSERLLSALAATPEIVR CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHH RDVPLLAPLSGATSSAGNVWFTRPDYDSEIVAAHNRLRQFGMRRIALVTAASFDPQLGAR CCCCCEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHH LRSALASDDSAETLDLYTLTGDPGDLAARIAPTKPTAVIVAGDTLAYASVGRALAQRGWY HHHHHCCCCCCCEEEEEEEECCCCHHEEEECCCCCCEEEEECCHHHHHHHHHHHHHCCCE GFLVGLSSVNPQVAREILGNGYSGGMLLAQTVPNPAGGGLKITREHIARMKQFLDEPPST EEEEECCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHCCCCCC ATLSGYIAASFLIQAISAAGGKASGPELRRALQSRVDLGGFTLDFTKGNRGSAFVDLNYI CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEE QGTSN CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA