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The map label for this gene is ydfH [H]

Identifier: 17547993

GI number: 17547993

Start: 3527614

End: 3528303

Strand: Direct

Name: ydfH [H]

Synonym: RSc3276

Alternate gene names: 17547993

Gene position: 3527614-3528303 (Clockwise)

Preceding gene: 17547992

Following gene: 17547994

Centisome position: 94.92

GC content: 68.7

Gene sequence:

>690_bases
ATGACTGAAGAAACACAAGCCGCCGACCTTTCCTCCGAGGGCATTGCCGAAGACATCGCCCAGGCGATCGTCGCCCACCG
GCTGCCCCCGGGCACCAAGCTGCGCGAAGAGGCGCTGGCGCGGGTGTACCACGTCAGCCGCACCAAGATCCGCGCGGCGC
TGCTGATGCTGGCCAAGGACAAGCTGATCCGCATCGAGCCGGACCGCGGCGCCTTCGTCGCCAGGCCGGACGAGACCGAG
GCGCGCGAGGTGTTCGCGGTGCGCCGCGTGCTGGAAGTGGCGCTGGCGCGCGAGTTCATCGCCCGCGCCACGCCCGCCGA
CTACGCGCGCCTGGAGCAGCACCTGGCCGAGGAGCACGAGGTCGCGGCCAGCACCGATGTCCCCCGCCGCAACCGGCTGA
TGGCCGACTTCCACCTGCTGATGGCCGACGTGGTCGGCAACAGCGTGCTCAAGGAAATGCTGCGCGAGCTGTCGGCGCGC
AGCTCGGTCATCACGATGATGTACCAGTCCACCTACGATGCGGTACGCTCCTCGGAAGAGCACACCGCCTTCCTGGACGC
CGCCAAGCGCGGCGACGTCGAAGGCGCCATCGCCCTGATGGAAGAGCACATGGCGCACACCGAGGCCTCGCTGCATTTCA
CGCTCACGCCCAGCGGCGAGACCGATCTCATCACCGCCCTGCTGGCCTGA

Upstream 100 bases:

>100_bases
GGAAGGCGAGGCGGCGGCGCGCGGCCATGGCATCCAGGTGCCATCGGCGTCCACGCTGCCGCATGCCTGAGGCCGGGCGG
ACGGCGGTAAAATCGCGGTC

Downstream 100 bases:

>100_bases
GCGCGCGGTGCCGACCTACACCTTGCGCGCGCCGGTCAGGGCCGAGCTGGAGATCCGGAAAAGCCGCTTCATCGGGCTGG
CCGTGCCGGTCGAGGACCGC

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTEETQAADLSSEGIAEDIAQAIVAHRLPPGTKLREEALARVYHVSRTKIRAALLMLAKDKLIRIEPDRGAFVARPDETE
AREVFAVRRVLEVALAREFIARATPADYARLEQHLAEEHEVAASTDVPRRNRLMADFHLLMADVVGNSVLKEMLRELSAR
SSVITMMYQSTYDAVRSSEEHTAFLDAAKRGDVEGAIALMEEHMAHTEASLHFTLTPSGETDLITALLA

Sequences:

>Translated_229_residues
MTEETQAADLSSEGIAEDIAQAIVAHRLPPGTKLREEALARVYHVSRTKIRAALLMLAKDKLIRIEPDRGAFVARPDETE
AREVFAVRRVLEVALAREFIARATPADYARLEQHLAEEHEVAASTDVPRRNRLMADFHLLMADVVGNSVLKEMLRELSAR
SSVITMMYQSTYDAVRSSEEHTAFLDAAKRGDVEGAIALMEEHMAHTEASLHFTLTPSGETDLITALLA
>Mature_228_residues
TEETQAADLSSEGIAEDIAQAIVAHRLPPGTKLREEALARVYHVSRTKIRAALLMLAKDKLIRIEPDRGAFVARPDETEA
REVFAVRRVLEVALAREFIARATPADYARLEQHLAEEHEVAASTDVPRRNRLMADFHLLMADVVGNSVLKEMLRELSARS
SVITMMYQSTYDAVRSSEEHTAFLDAAKRGDVEGAIALMEEHMAHTEASLHFTLTPSGETDLITALLA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=198, Percent_Identity=24.7474747474747, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25387; Mature: 25256

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEETQAADLSSEGIAEDIAQAIVAHRLPPGTKLREEALARVYHVSRTKIRAALLMLAKD
CCCCCCHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KLIRIEPDRGAFVARPDETEAREVFAVRRVLEVALAREFIARATPADYARLEQHLAEEHE
CEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VAASTDVPRRNRLMADFHLLMADVVGNSVLKEMLRELSARSSVITMMYQSTYDAVRSSEE
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
HTAFLDAAKRGDVEGAIALMEEHMAHTEASLHFTLTPSGETDLITALLA
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHC
>Mature Secondary Structure 
TEETQAADLSSEGIAEDIAQAIVAHRLPPGTKLREEALARVYHVSRTKIRAALLMLAKD
CCCCCHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KLIRIEPDRGAFVARPDETEAREVFAVRRVLEVALAREFIARATPADYARLEQHLAEEHE
CEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VAASTDVPRRNRLMADFHLLMADVVGNSVLKEMLRELSARSSVITMMYQSTYDAVRSSEE
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
HTAFLDAAKRGDVEGAIALMEEHMAHTEASLHFTLTPSGETDLITALLA
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]