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The map label for this gene is 17547939

Identifier: 17547939

GI number: 17547939

Start: 3481757

End: 3483286

Strand: Reverse

Name: 17547939

Synonym: RSc3220

Alternate gene names: NA

Gene position: 3483286-3481757 (Counterclockwise)

Preceding gene: 17547941

Following gene: 17547938

Centisome position: 93.73

GC content: 66.99

Gene sequence:

>1530_bases
GTGCGCTATGAGAACACCTTCACCTGCGTGCTGCGCGGTGTGCCACTGACCCCTGACTACGACCCCCGCATCGACTTGCC
GCGTACCGAGCCGATGAGCGCTGTGGTCGTCGGCCCGCAAGGCGAGGAAGTGCACTGCGATGCGATGGGCCGCTACAAGC
TGCAATTCGTCGGGCTGCACGCCGAAGACCACGCACACGCGCAAGGCGCGGGCACCAGTGGCACCGATCGGGACAGCGCC
TGGGTGCGGGCGGGCAACCTCTGGGCGGGGCAGCAGTACGGCATCAACATGCCGCTGCGCGCGGGGATGGAGGTGCTCGT
GGCCTTCGCCAACGGCAACCCCGACCGGCCGTACATCACGGCCGTCCTGCCGGGGTGGAACAACATGCCGGCTACGTTCA
GTAACACGGGTTCGCTGCCCGGCAACCGGTACGTGTCCGGGATCAAGACCCAGGAGATCAAAGGCCCGGGCCACAACCAG
CTCCGCCTGGACGATACGTCCGGCCAGATCAGCGGCCAGCTTGCCAGCACGCATGCCCACAGCCAACTCAATCTTGGCTA
TCTGACCCACCCGCGCGAGGAAGGCCAGGGCACGCCACGCGGCGAAGGGCTGGAGGCGCGCAGCGATGCCCACGTGGCCG
TGCGCAGCGGCATGGCGATGCTGCTATCAGCGTGGCAGCGCCTGAAGGCCAGCGGCGAGCAACTGGAGCGCGCGGAATAT
CTGCAATTGATGCAGGACAGCCTGGACCTGTTCAAGAGCCTGGGCGACTACGCTGAACAACATCAGGGTGTTGCGATGGA
CACGCAGCCGCAGGGCGCGCTGGCCGCCACCATCAAGGGCTGGCCCGACCAGCCGGGCACCACGCAGGGTGACCCCGCCG
CGCAGGCCGCCATCGGCATCACCGCGCCGGCCGGCATCAGCCTGGCGACGCCCAAGGCCGTGGTGACCTATGCCGGCAGC
AACGTCGATACCGTTGCACAGAAGCATGTGCAGATCACCAGCGGCGAGCGCACCAACCTGCATGCGGGCGGCGGTCTGTC
GCTCTTTGCGCATCAGGACGGCATCTCGGCCATTGCCAACCAGGGCAAGCTGCGCCTGCAGAGCCAGGCCGACGACACGC
TGATCGACTCGGCCAAGAACATCCACTGGACAGCCGTGGACGGCAAGCTCGTGGGCGTCGCCAAAGAGATTGTGTTCATG
ACGCCGGAAGGGGCCTATCTGAAGCTGCACGGCGACACCGTCGAGGTGGGCGGGAATGGCCCGTTCGTTTCCAAGAATGC
CGGTCACCAATGGGAGGGCCCGGCGAGTATGAGCGCGGACCTGCCCAAGTTCGACCACGGCGCGGTGGGGCGCGTGCCCA
AGCTGGTGCGCGACCTGGACCGGTCGGCCGCGAGCGGCTGCCAGGGCGAAGTCAAGCAAGCCACCGGAGGCGCCTCGCCG
GGCCAGACCAATGCCTCAGGCGAGCTTTCCGCCGTCAAGAGCGGCCGGCTCGAACAACTGGTCGTCAACTTCTTCAAGAA
CCGCAGCTAA

Upstream 100 bases:

>100_bases
CTTCGCCTCGCGTTCTCGATGTTCTTTTTTCCAGATCCCGCCTTTACACCACAACGGCGGGGAATTTTCAAACGGGCTCT
CAGATGGCGACAAGGCCGAG

Downstream 100 bases:

>100_bases
ACCCATGACGGATCCGACTTCCGACTCACCGCGCATCCTCGTTGGCAGCGTGACAGGCTTGACCCTGTTCGACCACCGCG
AACTGATTTGCGTCAAGCGC

Product: VGR-related protein

Products: NA

Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; VgrG Protein; Vgr-Related Protein; VGR-Like Protein; Rhs Element Vgr Family; Vgr Related Protein; Rhs Element Vgr Related Protein; Replication/Virulence Associated Protein; Type VI Secretion System Rhs Element Vgr Protein; Conserved Hypothethical Protein; VGR-Related Type VI Secretion System Protein; Type VI Secretion System VgrG Family Protein; RHS Accessory Genetic Element; Fimbrial Operon Related Protein

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MRYENTFTCVLRGVPLTPDYDPRIDLPRTEPMSAVVVGPQGEEVHCDAMGRYKLQFVGLHAEDHAHAQGAGTSGTDRDSA
WVRAGNLWAGQQYGINMPLRAGMEVLVAFANGNPDRPYITAVLPGWNNMPATFSNTGSLPGNRYVSGIKTQEIKGPGHNQ
LRLDDTSGQISGQLASTHAHSQLNLGYLTHPREEGQGTPRGEGLEARSDAHVAVRSGMAMLLSAWQRLKASGEQLERAEY
LQLMQDSLDLFKSLGDYAEQHQGVAMDTQPQGALAATIKGWPDQPGTTQGDPAAQAAIGITAPAGISLATPKAVVTYAGS
NVDTVAQKHVQITSGERTNLHAGGGLSLFAHQDGISAIANQGKLRLQSQADDTLIDSAKNIHWTAVDGKLVGVAKEIVFM
TPEGAYLKLHGDTVEVGGNGPFVSKNAGHQWEGPASMSADLPKFDHGAVGRVPKLVRDLDRSAASGCQGEVKQATGGASP
GQTNASGELSAVKSGRLEQLVVNFFKNRS

Sequences:

>Translated_509_residues
MRYENTFTCVLRGVPLTPDYDPRIDLPRTEPMSAVVVGPQGEEVHCDAMGRYKLQFVGLHAEDHAHAQGAGTSGTDRDSA
WVRAGNLWAGQQYGINMPLRAGMEVLVAFANGNPDRPYITAVLPGWNNMPATFSNTGSLPGNRYVSGIKTQEIKGPGHNQ
LRLDDTSGQISGQLASTHAHSQLNLGYLTHPREEGQGTPRGEGLEARSDAHVAVRSGMAMLLSAWQRLKASGEQLERAEY
LQLMQDSLDLFKSLGDYAEQHQGVAMDTQPQGALAATIKGWPDQPGTTQGDPAAQAAIGITAPAGISLATPKAVVTYAGS
NVDTVAQKHVQITSGERTNLHAGGGLSLFAHQDGISAIANQGKLRLQSQADDTLIDSAKNIHWTAVDGKLVGVAKEIVFM
TPEGAYLKLHGDTVEVGGNGPFVSKNAGHQWEGPASMSADLPKFDHGAVGRVPKLVRDLDRSAASGCQGEVKQATGGASP
GQTNASGELSAVKSGRLEQLVVNFFKNRS
>Mature_509_residues
MRYENTFTCVLRGVPLTPDYDPRIDLPRTEPMSAVVVGPQGEEVHCDAMGRYKLQFVGLHAEDHAHAQGAGTSGTDRDSA
WVRAGNLWAGQQYGINMPLRAGMEVLVAFANGNPDRPYITAVLPGWNNMPATFSNTGSLPGNRYVSGIKTQEIKGPGHNQ
LRLDDTSGQISGQLASTHAHSQLNLGYLTHPREEGQGTPRGEGLEARSDAHVAVRSGMAMLLSAWQRLKASGEQLERAEY
LQLMQDSLDLFKSLGDYAEQHQGVAMDTQPQGALAATIKGWPDQPGTTQGDPAAQAAIGITAPAGISLATPKAVVTYAGS
NVDTVAQKHVQITSGERTNLHAGGGLSLFAHQDGISAIANQGKLRLQSQADDTLIDSAKNIHWTAVDGKLVGVAKEIVFM
TPEGAYLKLHGDTVEVGGNGPFVSKNAGHQWEGPASMSADLPKFDHGAVGRVPKLVRDLDRSAASGCQGEVKQATGGASP
GQTNASGELSAVKSGRLEQLVVNFFKNRS

Specific function: Unknown

COG id: COG4253

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53945; Mature: 53945

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYENTFTCVLRGVPLTPDYDPRIDLPRTEPMSAVVVGPQGEEVHCDAMGRYKLQFVGLH
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEEEEE
AEDHAHAQGAGTSGTDRDSAWVRAGNLWAGQQYGINMPLRAGMEVLVAFANGNPDRPYIT
CCCCCCCCCCCCCCCCCCCCEEEECCEECCCCCCCCCCHHCCCEEEEEEECCCCCCCEEE
AVLPGWNNMPATFSNTGSLPGNRYVSGIKTQEIKGPGHNQLRLDDTSGQISGQLASTHAH
EECCCCCCCCCCCCCCCCCCCCHHCCCCEEEECCCCCCCEEEEECCCCCCCCEEECCCCC
SQLNLGYLTHPREEGQGTPRGEGLEARSDAHVAVRSGMAMLLSAWQRLKASGEQLERAEY
CEECCCEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
LQLMQDSLDLFKSLGDYAEQHQGVAMDTQPQGALAATIKGWPDQPGTTQGDPAAQAAIGI
HHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEECCCCCCCCCCCCCCHHHEEEEE
TAPAGISLATPKAVVTYAGSNVDTVAQKHVQITSGERTNLHAGGGLSLFAHQDGISAIAN
ECCCCCEECCCCEEEEECCCCHHHHHHHEEEEECCCCCEEECCCCEEEEEECCCHHHHHC
QGKLRLQSQADDTLIDSAKNIHWTAVDGKLVGVAKEIVFMTPEGAYLKLHGDTVEVGGNG
CCCEEEECCCCHHHHHCCCCEEEEEECCEEEEEEEEEEEECCCCCEEEEECCEEEECCCC
PFVSKNAGHQWEGPASMSADLPKFDHGAVGRVPKLVRDLDRSAASGCQGEVKQATGGASP
CEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC
GQTNASGELSAVKSGRLEQLVVNFFKNRS
CCCCCCCCCHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRYENTFTCVLRGVPLTPDYDPRIDLPRTEPMSAVVVGPQGEEVHCDAMGRYKLQFVGLH
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEEEEE
AEDHAHAQGAGTSGTDRDSAWVRAGNLWAGQQYGINMPLRAGMEVLVAFANGNPDRPYIT
CCCCCCCCCCCCCCCCCCCCEEEECCEECCCCCCCCCCHHCCCEEEEEEECCCCCCCEEE
AVLPGWNNMPATFSNTGSLPGNRYVSGIKTQEIKGPGHNQLRLDDTSGQISGQLASTHAH
EECCCCCCCCCCCCCCCCCCCCHHCCCCEEEECCCCCCCEEEEECCCCCCCCEEECCCCC
SQLNLGYLTHPREEGQGTPRGEGLEARSDAHVAVRSGMAMLLSAWQRLKASGEQLERAEY
CEECCCEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
LQLMQDSLDLFKSLGDYAEQHQGVAMDTQPQGALAATIKGWPDQPGTTQGDPAAQAAIGI
HHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEECCCCCCCCCCCCCCHHHEEEEE
TAPAGISLATPKAVVTYAGSNVDTVAQKHVQITSGERTNLHAGGGLSLFAHQDGISAIAN
ECCCCCEECCCCEEEEECCCCHHHHHHHEEEEECCCCCEEECCCCEEEEEECCCHHHHHC
QGKLRLQSQADDTLIDSAKNIHWTAVDGKLVGVAKEIVFMTPEGAYLKLHGDTVEVGGNG
CCCEEEECCCCHHHHHCCCCEEEEEECCEEEEEEEEEEEECCCCCEEEEECCEEEECCCC
PFVSKNAGHQWEGPASMSADLPKFDHGAVGRVPKLVRDLDRSAASGCQGEVKQATGGASP
CEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC
GQTNASGELSAVKSGRLEQLVVNFFKNRS
CCCCCCCCCHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA