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The map label for this gene is 17547941

Identifier: 17547941

GI number: 17547941

Start: 3483721

End: 3485364

Strand: Reverse

Name: 17547941

Synonym: RSc3222

Alternate gene names: NA

Gene position: 3485364-3483721 (Counterclockwise)

Preceding gene: 17547943

Following gene: 17547939

Centisome position: 93.78

GC content: 65.33

Gene sequence:

>1644_bases
GTGCAGCAAATCGACTTGCAAAGAGCGCTCACCCAGAACCGCCGCGCCATGCGCCTGGATTTCGGCCACACCGCGAACGC
TGCCGCTCAAACGCTGGTGCCGCAATACGCCGATATCCGCCAAGGCCTCTGCGCCGGCCTTCAGGCCCAGGTGATCTGCC
TGTCGGAGCATCCTGATTTGCCGCAGCAGGATCTGCTCGGCGTGCCCGTGTCAATCCAACTGGCGACGAACGAGGGCGTG
CTGTACCCGATCAACGGGGTCATCACGGACATACAGTCCGGCCAGTCCGATGGCACGCTCACGAGTTACCGGCTCACGGT
CGGTGACGCCATGTCGCTGATGCGCGGGCGCCGGAACATGCGCACCTTCGTCGGAAAGAGCGTGCCCGAGATTCTGGAAA
CGATGCTGGGCGAGTGGCAACAGCGCAGTGCCGCCATGGACCGTGTATTCGATTTCGAGCTGTTGCTCGACCGTGGACGC
TACCCAAAGCGTGCGCAAACGCTCCAGCTGGACGAGTCGGACTACGGCTTTCTCGATCGCATGACGCGGCACGACGGCAT
CTGGTGTTTCGTCAAGGCCGGCACGCGCGACGGCTCCGCCAGCAACGCGCCCGTGCACACACTAGTGTTCTGCGACGATC
CGATGCGCCTGCCGCAGTCGGCAGCGGGCACGGTGCCCTACCACTACGGCGCCGCCGTCAAGGAGCGCGATTCGATCACC
CGCTGGAGCGAGGCGCGCAGCCTGATTCCCGGCGCCATCCGGGGCACGAGCCCCGATCATGAAACCGGCAAGGTGGATCG
GGTCGAAGTCGATACGATGCTCGATCAGGGCAAAGCCGGCAACGACCTCGCGCGCCTGATGACGGATGCGGCCGTCGACC
GGCCGCACGCGGGCAATTCGCGCGAGGACTACCAGCGCGTAGGCAAGCTGCGCATGCAGGCACACGAGCGCCGCGCCGCG
TGCGTGCATGCGGCCAGCGACGTGCGCAACCTGACGCCCGGTTTCTGGTTCACATTGCGCGGCCATCGGCAGGTGGACCG
GCGCGAGGCGAGACAGCGCGAGTTCGTGGTCACCGGCCAGCACCAGCAGGTCATCAACAACTTTCCAAAGGCGTTGGGCG
AACAGGCGCGGGCGCTAGCTGAGGCCAGCGGCTGGCACATCGAGATGCGCTCAGAGCCCGTTTGGAAATTCAACGATGAG
CGATTCTGCGCAGTAGCAAGCCGCTCATCGCGATATGAATCATGGCTTCCGAGACGTCCGCGCGCTGCTCGTAGTCGCGT
ACGAGTCGGCGCCAGCGAACCATCCACCCAAAGGTGCGCTCGACCACCCAGCGGCGCGGCAGAACGGCAAAGCCCGTTTG
CTGCTCGTGCCGGCGCACCACCTCAACCACGAAGTCGAGGGTCGCGGCCCTGTCCATCAGCGCCGTGCGGTCGTAGGCGC
CGTCTGCGAACAGGTGTTTCACACCCGGCCAGCGCTTCTTCACCGCTTCCAGCACCGCCAGTGCCCCCGTGCTGTCGGCA
ATATCCGCCGACGTCAGGTTCACCATCAGCAGCCGTCCATCCGTGTCCACCGCGATATGCCGCTTGCGCCCGACGATTTT
CTTGGCCGCGTCGTAGCCACGCTTGTCGGCCGAGGGCGCTTTGA

Upstream 100 bases:

>100_bases
TCTTTTCACTGCTTCCCTCTGAATCCATGTATGCAGCCGCGCCTATCCTGACCGCGGCTGTTTCCGTTTGTTTACCAGTC
TTCCGAAAGGTGAATCCGAC

Downstream 100 bases:

>100_bases
CTGTCTGGCTGTCGATGACGCCCGCACTCGGGCACGGCTGCCGCCCAGCCAACTCCCGGTCTAGCATCAGCACCACGTCG
TGCAGCGTGCGGAACAGCAA

Product: VGR-related protein

Products: NA

Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; Vgr-Related Protein; VGR-Like Protein; Rhs Element Vgr Family; VGR-Related Type VI Secretion System Protein; Vgr Related Protein; Rhs Element Vgr Related Protein; Conserved Hypothethical Protein; Type VI Secretion System VgrG Family Protein; Rhs Family Protein; VgrG Protein; Rhs Element Vgr-Related Protein

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MQQIDLQRALTQNRRAMRLDFGHTANAAAQTLVPQYADIRQGLCAGLQAQVICLSEHPDLPQQDLLGVPVSIQLATNEGV
LYPINGVITDIQSGQSDGTLTSYRLTVGDAMSLMRGRRNMRTFVGKSVPEILETMLGEWQQRSAAMDRVFDFELLLDRGR
YPKRAQTLQLDESDYGFLDRMTRHDGIWCFVKAGTRDGSASNAPVHTLVFCDDPMRLPQSAAGTVPYHYGAAVKERDSIT
RWSEARSLIPGAIRGTSPDHETGKVDRVEVDTMLDQGKAGNDLARLMTDAAVDRPHAGNSREDYQRVGKLRMQAHERRAA
CVHAASDVRNLTPGFWFTLRGHRQVDRREARQREFVVTGQHQQVINNFPKALGEQARALAEASGWHIEMRSEPVWKFNDE
RFCAVASRSSRYESWLPRRPRAARSRVRVGASEPSTQRCARPPSGAAERQSPFAARAGAPPQPRSRGSRPCPSAPCGRRR
RLRTGVSHPASASSPLPAPPVPPCCRQYPPTSGSPSAAVHPCPPRYAACARRFSWPRRSHACRPRAL

Sequences:

>Translated_547_residues
MQQIDLQRALTQNRRAMRLDFGHTANAAAQTLVPQYADIRQGLCAGLQAQVICLSEHPDLPQQDLLGVPVSIQLATNEGV
LYPINGVITDIQSGQSDGTLTSYRLTVGDAMSLMRGRRNMRTFVGKSVPEILETMLGEWQQRSAAMDRVFDFELLLDRGR
YPKRAQTLQLDESDYGFLDRMTRHDGIWCFVKAGTRDGSASNAPVHTLVFCDDPMRLPQSAAGTVPYHYGAAVKERDSIT
RWSEARSLIPGAIRGTSPDHETGKVDRVEVDTMLDQGKAGNDLARLMTDAAVDRPHAGNSREDYQRVGKLRMQAHERRAA
CVHAASDVRNLTPGFWFTLRGHRQVDRREARQREFVVTGQHQQVINNFPKALGEQARALAEASGWHIEMRSEPVWKFNDE
RFCAVASRSSRYESWLPRRPRAARSRVRVGASEPSTQRCARPPSGAAERQSPFAARAGAPPQPRSRGSRPCPSAPCGRRR
RLRTGVSHPASASSPLPAPPVPPCCRQYPPTSGSPSAAVHPCPPRYAACARRFSWPRRSHACRPRAL
>Mature_547_residues
MQQIDLQRALTQNRRAMRLDFGHTANAAAQTLVPQYADIRQGLCAGLQAQVICLSEHPDLPQQDLLGVPVSIQLATNEGV
LYPINGVITDIQSGQSDGTLTSYRLTVGDAMSLMRGRRNMRTFVGKSVPEILETMLGEWQQRSAAMDRVFDFELLLDRGR
YPKRAQTLQLDESDYGFLDRMTRHDGIWCFVKAGTRDGSASNAPVHTLVFCDDPMRLPQSAAGTVPYHYGAAVKERDSIT
RWSEARSLIPGAIRGTSPDHETGKVDRVEVDTMLDQGKAGNDLARLMTDAAVDRPHAGNSREDYQRVGKLRMQAHERRAA
CVHAASDVRNLTPGFWFTLRGHRQVDRREARQREFVVTGQHQQVINNFPKALGEQARALAEASGWHIEMRSEPVWKFNDE
RFCAVASRSSRYESWLPRRPRAARSRVRVGASEPSTQRCARPPSGAAERQSPFAARAGAPPQPRSRGSRPCPSAPCGRRR
RLRTGVSHPASASSPLPAPPVPPCCRQYPPTSGSPSAAVHPCPPRYAACARRFSWPRRSHACRPRAL

Specific function: Unknown

COG id: COG3501

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60742; Mature: 60742

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQIDLQRALTQNRRAMRLDFGHTANAAAQTLVPQYADIRQGLCAGLQAQVICLSEHPDL
CCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
PQQDLLGVPVSIQLATNEGVLYPINGVITDIQSGQSDGTLTSYRLTVGDAMSLMRGRRNM
CHHHHCCCCEEEEEECCCCEEEECCHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHH
RTFVGKSVPEILETMLGEWQQRSAAMDRVFDFELLLDRGRYPKRAQTLQLDESDYGFLDR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHH
MTRHDGIWCFVKAGTRDGSASNAPVHTLVFCDDPMRLPQSAAGTVPYHYGAAVKERDSIT
HHCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
RWSEARSLIPGAIRGTSPDHETGKVDRVEVDTMLDQGKAGNDLARLMTDAAVDRPHAGNS
HHHHHHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
REDYQRVGKLRMQAHERRAACVHAASDVRNLTPGFWFTLRGHRQVDRREARQREFVVTGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCEEEECC
HQQVINNFPKALGEQARALAEASGWHIEMRSEPVWKFNDERFCAVASRSSRYESWLPRRP
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEECCCEEEEECCCCHHHHHHCCCCC
RAARSRVRVGASEPSTQRCARPPSGAAERQSPFAARAGAPPQPRSRGSRPCPSAPCGRRR
HHHHHHEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHH
RLRTGVSHPASASSPLPAPPVPPCCRQYPPTSGSPSAAVHPCPPRYAACARRFSWPRRSH
HHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHC
ACRPRAL
CCCCCCC
>Mature Secondary Structure
MQQIDLQRALTQNRRAMRLDFGHTANAAAQTLVPQYADIRQGLCAGLQAQVICLSEHPDL
CCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
PQQDLLGVPVSIQLATNEGVLYPINGVITDIQSGQSDGTLTSYRLTVGDAMSLMRGRRNM
CHHHHCCCCEEEEEECCCCEEEECCHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHH
RTFVGKSVPEILETMLGEWQQRSAAMDRVFDFELLLDRGRYPKRAQTLQLDESDYGFLDR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHH
MTRHDGIWCFVKAGTRDGSASNAPVHTLVFCDDPMRLPQSAAGTVPYHYGAAVKERDSIT
HHCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
RWSEARSLIPGAIRGTSPDHETGKVDRVEVDTMLDQGKAGNDLARLMTDAAVDRPHAGNS
HHHHHHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
REDYQRVGKLRMQAHERRAACVHAASDVRNLTPGFWFTLRGHRQVDRREARQREFVVTGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCEEEECC
HQQVINNFPKALGEQARALAEASGWHIEMRSEPVWKFNDERFCAVASRSSRYESWLPRRP
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEECCCEEEEECCCCHHHHHHCCCCC
RAARSRVRVGASEPSTQRCARPPSGAAERQSPFAARAGAPPQPRSRGSRPCPSAPCGRRR
HHHHHHEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHH
RLRTGVSHPASASSPLPAPPVPPCCRQYPPTSGSPSAAVHPCPPRYAACARRFSWPRRSH
HHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHC
ACRPRAL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA