| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is fhaB [H]
Identifier: 17547902
GI number: 17547902
Start: 3442287
End: 3444827
Strand: Reverse
Name: fhaB [H]
Synonym: RSc3183
Alternate gene names: 17547902
Gene position: 3444827-3442287 (Counterclockwise)
Preceding gene: 17547903
Following gene: 17547901
Centisome position: 92.69
GC content: 68.67
Gene sequence:
>2541_bases GTGCATTCACCACACCGCCCGGCCCAGTTGGCCGCGCTCCTCGGCCTCTACGCCATCCTCATCCCACCAGCCGCCATCGC CGCCGGCATCGTCCCCGACGGCGGCACCGCCACCACGGTCACCACAGGCGCCAATGGCCGCCCAGTAGTCAACATCGCCC CCAGCACCGCAGGCGTCTCCCACAACATCTACACCTCCTTCAACGTAGGCCCAGTCGGCGCCGACCTGAACAACGCCATC GTCCGCGCTCGCACCATCGTCAACCAGGTCACCAGCACCGACCCGTCGCTGATCCAGGGCAACATCGCCGTGCTGGGGCC GCGCGCCAACGTGATCATCGCCAACCCGAACGGCATCACGGTGGACGGTGGTTCGTTCACCAACACGGGCAATGTGGCGC TGACCACGGGCCAGGTGTCGTTCAACGACTTCACCACGGGCGCCGGCCAGCTGCAGCGCAACGTGGTGCTCAATACCGGC GCCGGCGCCATCAACATCGGCCCGGGCGGCCTGGCCGGGGCGATGCTGAACCTGGAGCTGATCGCCAAGCAGGTGCGCGT GGCGGGCGCGGTGCAGAACAGCTTCACCGATGCCAACAGCAAGGTCCGCATCGTCGCGGGCGACAGCCGGGCGGAGATCG ATACCAGCGTGTCGCCCACCGATAACCTGAACCCGTGGGTCACCTACAGCAGCACGGGATCGGGCCGGCCGCTGGGGCTG GCCATCGATATCGCGTCGGGCGGGTCGCTCACGGGCGGGCGGATCGAGCTGCTGGTCACGGACCAGGGTGCGGGTGTGCG GCACGCCGGCGCGGCGTTTGCGACGGCCGGCGACTTCGTCATCAGCGGTACGGGCGATTTGCAGTTGGCTGGCGGCGGCG TCAGCGCGGCCAATGATGTGCTGATCGGTTCGGCGGGTCTGTTGGGCAATGGCGCACTGACGGCCGGTCGGAACCTCCAG GTGAGTGCGAACAAGGTGCATCTCGATGGCACGACGTTGTCGGCGGGTACCGCGTCACAGGTCGGCAGCATCGTGATCGG CGCGTCGGGGCAGGTGCATACCGAGCCGGTCACGATCGACCACGGCACGCTGAGCGCGACGGGCGGCGTCGGCCTGTTCG ATGCCGGGCCCGGTGTCTCCATGACGGCGACGCAGTTGACGGCGGCCCAGAACGTGGTCGCGCAGGTCGGGGCGCTGTCG CTCGGTGCGGATGCGTCGGGCGCGAGCCGATGGACCTCGCAGCAGGGCACGGTGGCCATCACTGCGCCCGGTGCCATGCA GGTGGCGGGCAGCAAGATCGACGGCACGGGCGGGACGACGGTGCAGGCCGGCTCCATCGCGCTCAGCGCGGTGAATGGCA CGGCGGCCACGGTGCAGTCCTCGGGCGGCGACGTGACGCTGAATGCCACGGGTGCCTACGCGCAGACCGACTCGAACGTC ATCGCAGCAGGCAATGCGACGATCCACGGCGGCAGCGTCAACTTCGCGGCGTCGGCGCTGCCGGCGTCGGTGGCGGCCAT GAGTGGCGGTGTGCTGATCCGGAGCGATGCGGATCTCGTCAACCTCGGCGGGCTGATCCAGGGCAAGACGCGCAACGCCG GCCAATCGGCCTCCGAAGGCGCGGTCACGCTGATTGCGGCTGGAGTCGTGCGCAACGATGCCACCGCGAGCACGCAGGGC ATTGTCTTCGGCCAGGACGATGACGTGGTGGTGCGCGCCGGCGGCGACATCGTCAACCACCAGAGCCGCATCCTGTCGAA CGCGAAGCTGACGTTGGCCGCGCAGGGCGATGTGTTCAACACGCTGGACAAGACCGCCGGCGCCAACGGCGAGAAGCCTG TCGCCTGGACCAGCAGCGGCACGCGCTGGCTGTTCCTGCGCAACCACAGCGCGGGGCTCGATGTGGACTACGGTTCCATT GCGCAGACGGGCCAGGTGCCGTATTTCGTGTCGCAGACGGGCACGACGATCAGCGGCCGCAATGTCAGCAACGTCGGCGG GCAGGTGCTTTCCAACGGCGGCGATATCGCCATCACGGCCGCCAACGTTTTCCATAACGAAGTGCTGGCGACGGGCTCGG CGCACTTCAGCCGCAGCTGCATGATCTTCTGCCGCACCGAGGCATCGAGCACGGTGTCGACCACGGGCGGTACGATCTCG GCGGCGGGCAACCTGTCCATCCGGGCCGGCACGCTGGCCGAGAACATCGGCGGGCAGGTGCTCTCCATCGGCAGCATGAC CGTGACCGCGCCCAAGGTGCGCGCGGTCGGCATCACCGGCTATACGGCGCTGGCGCGCGAGCGCGGCTTCAAGGCGTTCT TCGGCGATACGTGGGCGCGCCTGTACGCGGCCGACGTGGGCGGCAGCTGGTTCGCCATCGGCGGTGGCTTGACGATCAAC GGCCAGGGCCAGATCGAGGGCGGCAGTTTCGACGGGCAGAGCGTCACCGCCAGCAATGGCATCGTGACGGTGCGAGCCAA GTCGCGGCAGCCGGTGTCGATCGAGTCGCGAGTCGGCTTGACGTCGTGGTTGTGGCAGTGA
Upstream 100 bases:
>100_bases AGGGAGTTGCTCAAGCAGGTTGAGAAAGATCTATTTCGAAGTGTTCGGTAAAAAACCGAGCAAAGATAACAAGATAAATT TGTAATTCAGGGGAAGTTCC
Downstream 100 bases:
>100_bases GGGGAAGCGCGATGGCATTGAAACCTCTCACGCTGGCGGCGGCGTTGCTGTCCGTGGCAACCGCCCACGCGCAGGTCCTG CCGCCCGCGCCACCGGGTCC
Product: hemagglutinin-like signal peptide protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MHSPHRPAQLAALLGLYAILIPPAAIAAGIVPDGGTATTVTTGANGRPVVNIAPSTAGVSHNIYTSFNVGPVGADLNNAI VRARTIVNQVTSTDPSLIQGNIAVLGPRANVIIANPNGITVDGGSFTNTGNVALTTGQVSFNDFTTGAGQLQRNVVLNTG AGAINIGPGGLAGAMLNLELIAKQVRVAGAVQNSFTDANSKVRIVAGDSRAEIDTSVSPTDNLNPWVTYSSTGSGRPLGL AIDIASGGSLTGGRIELLVTDQGAGVRHAGAAFATAGDFVISGTGDLQLAGGGVSAANDVLIGSAGLLGNGALTAGRNLQ VSANKVHLDGTTLSAGTASQVGSIVIGASGQVHTEPVTIDHGTLSATGGVGLFDAGPGVSMTATQLTAAQNVVAQVGALS LGADASGASRWTSQQGTVAITAPGAMQVAGSKIDGTGGTTVQAGSIALSAVNGTAATVQSSGGDVTLNATGAYAQTDSNV IAAGNATIHGGSVNFAASALPASVAAMSGGVLIRSDADLVNLGGLIQGKTRNAGQSASEGAVTLIAAGVVRNDATASTQG IVFGQDDDVVVRAGGDIVNHQSRILSNAKLTLAAQGDVFNTLDKTAGANGEKPVAWTSSGTRWLFLRNHSAGLDVDYGSI AQTGQVPYFVSQTGTTISGRNVSNVGGQVLSNGGDIAITAANVFHNEVLATGSAHFSRSCMIFCRTEASSTVSTTGGTIS AAGNLSIRAGTLAENIGGQVLSIGSMTVTAPKVRAVGITGYTALARERGFKAFFGDTWARLYAADVGGSWFAIGGGLTIN GQGQIEGGSFDGQSVTASNGIVTVRAKSRQPVSIESRVGLTSWLWQ
Sequences:
>Translated_846_residues MHSPHRPAQLAALLGLYAILIPPAAIAAGIVPDGGTATTVTTGANGRPVVNIAPSTAGVSHNIYTSFNVGPVGADLNNAI VRARTIVNQVTSTDPSLIQGNIAVLGPRANVIIANPNGITVDGGSFTNTGNVALTTGQVSFNDFTTGAGQLQRNVVLNTG AGAINIGPGGLAGAMLNLELIAKQVRVAGAVQNSFTDANSKVRIVAGDSRAEIDTSVSPTDNLNPWVTYSSTGSGRPLGL AIDIASGGSLTGGRIELLVTDQGAGVRHAGAAFATAGDFVISGTGDLQLAGGGVSAANDVLIGSAGLLGNGALTAGRNLQ VSANKVHLDGTTLSAGTASQVGSIVIGASGQVHTEPVTIDHGTLSATGGVGLFDAGPGVSMTATQLTAAQNVVAQVGALS LGADASGASRWTSQQGTVAITAPGAMQVAGSKIDGTGGTTVQAGSIALSAVNGTAATVQSSGGDVTLNATGAYAQTDSNV IAAGNATIHGGSVNFAASALPASVAAMSGGVLIRSDADLVNLGGLIQGKTRNAGQSASEGAVTLIAAGVVRNDATASTQG IVFGQDDDVVVRAGGDIVNHQSRILSNAKLTLAAQGDVFNTLDKTAGANGEKPVAWTSSGTRWLFLRNHSAGLDVDYGSI AQTGQVPYFVSQTGTTISGRNVSNVGGQVLSNGGDIAITAANVFHNEVLATGSAHFSRSCMIFCRTEASSTVSTTGGTIS AAGNLSIRAGTLAENIGGQVLSIGSMTVTAPKVRAVGITGYTALARERGFKAFFGDTWARLYAADVGGSWFAIGGGLTIN GQGQIEGGSFDGQSVTASNGIVTVRAKSRQPVSIESRVGLTSWLWQ >Mature_846_residues MHSPHRPAQLAALLGLYAILIPPAAIAAGIVPDGGTATTVTTGANGRPVVNIAPSTAGVSHNIYTSFNVGPVGADLNNAI VRARTIVNQVTSTDPSLIQGNIAVLGPRANVIIANPNGITVDGGSFTNTGNVALTTGQVSFNDFTTGAGQLQRNVVLNTG AGAINIGPGGLAGAMLNLELIAKQVRVAGAVQNSFTDANSKVRIVAGDSRAEIDTSVSPTDNLNPWVTYSSTGSGRPLGL AIDIASGGSLTGGRIELLVTDQGAGVRHAGAAFATAGDFVISGTGDLQLAGGGVSAANDVLIGSAGLLGNGALTAGRNLQ VSANKVHLDGTTLSAGTASQVGSIVIGASGQVHTEPVTIDHGTLSATGGVGLFDAGPGVSMTATQLTAAQNVVAQVGALS LGADASGASRWTSQQGTVAITAPGAMQVAGSKIDGTGGTTVQAGSIALSAVNGTAATVQSSGGDVTLNATGAYAQTDSNV IAAGNATIHGGSVNFAASALPASVAAMSGGVLIRSDADLVNLGGLIQGKTRNAGQSASEGAVTLIAAGVVRNDATASTQG IVFGQDDDVVVRAGGDIVNHQSRILSNAKLTLAAQGDVFNTLDKTAGANGEKPVAWTSSGTRWLFLRNHSAGLDVDYGSI AQTGQVPYFVSQTGTTISGRNVSNVGGQVLSNGGDIAITAANVFHNEVLATGSAHFSRSCMIFCRTEASSTVSTTGGTIS AAGNLSIRAGTLAENIGGQVLSIGSMTVTAPKVRAVGITGYTALARERGFKAFFGDTWARLYAADVGGSWFAIGGGLTIN GQGQIEGGSFDGQSVTASNGIVTVRAKSRQPVSIESRVGLTSWLWQ
Specific function: Evidence for a role in host-cell binding and infection [H]
COG id: COG3210
COG function: function code U; Large exoproteins involved in heme utilization or adhesion
Gene ontology:
Cell location: Cell surface [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010069 - InterPro: IPR008619 - InterPro: IPR008638 - InterPro: IPR012334 - InterPro: IPR011050 - InterPro: IPR011102 [H]
Pfam domain/function: PF05594 Fil_haemagg; PF05860 Haemagg_act [H]
EC number: NA
Molecular weight: Translated: 83997; Mature: 83997
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: PS00144 ASN_GLN_ASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSPHRPAQLAALLGLYAILIPPAAIAAGIVPDGGTATTVTTGANGRPVVNIAPSTAGVS CCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCC HNIYTSFNVGPVGADLNNAIVRARTIVNQVTSTDPSLIQGNIAVLGPRANVIIANPNGIT CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCEEEECCCCCEEEECCCEEE VDGGSFTNTGNVALTTGQVSFNDFTTGAGQLQRNVVLNTGAGAINIGPGGLAGAMLNLEL ECCCCCCCCCCEEEEECEEEECCCCCCCCCEEEEEEEECCCCEEEECCCCHHHHHHHHHH IAKQVRVAGAVQNSFTDANSKVRIVAGDSRAEIDTSVSPTDNLNPWVTYSSTGSGRPLGL HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCCEEECCCCCCCEEEE AIDIASGGSLTGGRIELLVTDQGAGVRHAGAAFATAGDFVISGTGDLQLAGGGVSAANDV EEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCEEEECCCCEEEECCCCCCCCEE LIGSAGLLGNGALTAGRNLQVSANKVHLDGTTLSAGTASQVGSIVIGASGQVHTEPVTID EEECCCCCCCCCEECCCEEEEECCEEEECCCEECCCCHHCCCEEEEECCCCEECCCEEEE HGTLSATGGVGLFDAGPGVSMTATQLTAAQNVVAQVGALSLGADASGASRWTSQQGTVAI CCCEEECCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEEE TAPGAMQVAGSKIDGTGGTTVQAGSIALSAVNGTAATVQSSGGDVTLNATGAYAQTDSNV ECCCCEEECCCEECCCCCCEEEECCEEEEEECCCEEEEECCCCEEEEEECCCEEECCCCE IAAGNATIHGGSVNFAASALPASVAAMSGGVLIRSDADLVNLGGLIQGKTRNAGQSASEG EEECCCEEECCCCCEEHHHCCHHHHHHCCCEEEECCCCEEECCCEEECCCCCCCCCCCCC AVTLIAAGVVRNDATASTQGIVFGQDDDVVVRAGGDIVNHQSRILSNAKLTLAAQGDVFN CEEEEEEEEEECCCCCCCCEEEEECCCCEEEEECCCEECCHHHHHCCCEEEEEECCCHHH TLDKTAGANGEKPVAWTSSGTRWLFLRNHSAGLDVDYGSIAQTGQVPYFVSQTGTTISGR HHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCEECCC NVSNVGGQVLSNGGDIAITAANVFHNEVLATGSAHFSRSCMIFCRTEASSTVSTTGGTIS CCCCCCCCEECCCCCEEEEEEHHHCCHHEECCCCCCCCEEEEEEECCCCCEEEECCCEEE AAGNLSIRAGTLAENIGGQVLSIGSMTVTAPKVRAVGITGYTALARERGFKAFFGDTWAR ECCCEEEEECCHHHHCCCCEEEECCEEEECCCEEEEEECCHHHHHHHCCCEEECCCCEEE LYAADVGGSWFAIGGGLTINGQGQIEGGSFDGQSVTASNGIVTVRAKSRQPVSIESRVGL EEEECCCCCEEEECCCEEECCCCEECCCCCCCCEEEECCCEEEEEECCCCCEEEHHCCCC TSWLWQ HHHHCC >Mature Secondary Structure MHSPHRPAQLAALLGLYAILIPPAAIAAGIVPDGGTATTVTTGANGRPVVNIAPSTAGVS CCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCC HNIYTSFNVGPVGADLNNAIVRARTIVNQVTSTDPSLIQGNIAVLGPRANVIIANPNGIT CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCEEEECCCCCEEEECCCEEE VDGGSFTNTGNVALTTGQVSFNDFTTGAGQLQRNVVLNTGAGAINIGPGGLAGAMLNLEL ECCCCCCCCCCEEEEECEEEECCCCCCCCCEEEEEEEECCCCEEEECCCCHHHHHHHHHH IAKQVRVAGAVQNSFTDANSKVRIVAGDSRAEIDTSVSPTDNLNPWVTYSSTGSGRPLGL HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCCEEECCCCCCCEEEE AIDIASGGSLTGGRIELLVTDQGAGVRHAGAAFATAGDFVISGTGDLQLAGGGVSAANDV EEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCEEEECCCCEEEECCCCCCCCEE LIGSAGLLGNGALTAGRNLQVSANKVHLDGTTLSAGTASQVGSIVIGASGQVHTEPVTID EEECCCCCCCCCEECCCEEEEECCEEEECCCEECCCCHHCCCEEEEECCCCEECCCEEEE HGTLSATGGVGLFDAGPGVSMTATQLTAAQNVVAQVGALSLGADASGASRWTSQQGTVAI CCCEEECCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEEE TAPGAMQVAGSKIDGTGGTTVQAGSIALSAVNGTAATVQSSGGDVTLNATGAYAQTDSNV ECCCCEEECCCEECCCCCCEEEECCEEEEEECCCEEEEECCCCEEEEEECCCEEECCCCE IAAGNATIHGGSVNFAASALPASVAAMSGGVLIRSDADLVNLGGLIQGKTRNAGQSASEG EEECCCEEECCCCCEEHHHCCHHHHHHCCCEEEECCCCEEECCCEEECCCCCCCCCCCCC AVTLIAAGVVRNDATASTQGIVFGQDDDVVVRAGGDIVNHQSRILSNAKLTLAAQGDVFN CEEEEEEEEEECCCCCCCCEEEEECCCCEEEEECCCEECCHHHHHCCCEEEEEECCCHHH TLDKTAGANGEKPVAWTSSGTRWLFLRNHSAGLDVDYGSIAQTGQVPYFVSQTGTTISGR HHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCEECCC NVSNVGGQVLSNGGDIAITAANVFHNEVLATGSAHFSRSCMIFCRTEASSTVSTTGGTIS CCCCCCCCEECCCCCEEEEEEHHHCCHHEECCCCCCCCEEEEEEECCCCCEEEECCCEEE AAGNLSIRAGTLAENIGGQVLSIGSMTVTAPKVRAVGITGYTALARERGFKAFFGDTWAR ECCCEEEEECCHHHHCCCCEEEECCEEEECCCEEEEEECCHHHHHHHCCCEEECCCCEEE LYAADVGGSWFAIGGGLTINGQGQIEGGSFDGQSVTASNGIVTVRAKSRQPVSIESRVGL EEEECCCCCEEEECCCEEECCCCEECCCCCCCCEEEECCCEEEEEECCCCCEEEHHCCCC TSWLWQ HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2388559; 12910271; 2539596; 1696934; 1791761 [H]