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The map label for this gene is ydcN [C]

Identifier: 17547851

GI number: 17547851

Start: 3378843

End: 3379472

Strand: Direct

Name: ydcN [C]

Synonym: RSc3132

Alternate gene names: 17547851

Gene position: 3378843-3379472 (Clockwise)

Preceding gene: 17547850

Following gene: 17547852

Centisome position: 90.92

GC content: 71.43

Gene sequence:

>630_bases
ATGCCGGAATACGAAGATCCCCCCACCGCCGACACCGATACCGGTATCAACGAGCGCATCGCTCGCCGTGTGCGCGACTT
GCGGGCGGCGCGCGGCTACACGCTCGATGCGCTCGCCGCGCGCTGCGGCGTGAGCCGGTCCATGATTTCCCTGATCGAGC
GCGGCGCGGCCAGCCCGACGGCGGTCGTGCTGGACAAGCTGGCGGCCGGGCTCGGCGTGTCGCTGGCCAGCCTGTTCGGC
GGCGAGCGCGAGGGCGTGCCCGCCCAGCCGCTGATGCGCCGCGCGCAACAGGCCCAGTGGCGCGACCCCGCGTCCGGCTA
CGTGCGGCGCAACCTCTCCCCGCCCGACTGGCCATCGCCCATCCAGCTGGTCGAAGTGAACTTCCCGGCCGGCGCGCGCG
TAGCCTACGAAACGGGCGGGCGGGAGAACGCCATGCAGCAGCAGGTCTGGGTGATCGACGGACGCATCGACGTCATGCTC
GGCGACCAGCGCCACGAACTTCACCCGGGCGACTGCCTGGCCATGCGGCTGGATCAGCCGCTGATTTTCAGCAACCCCAC
GTCCCAGGCGGCGCATTACGTCGTGGCCATTTGCGACGCGCCCGCCGTGGCCGGCGCGTGGAGTGCCTGA

Upstream 100 bases:

>100_bases
GCACACGCACACTGAGACGTTCCGATCGCACGCACAGGCCACAAGCTGGCCGAGACGATCGTTGACGATCAAATCCAGTT
TACTGGATAATGAATCTACT

Downstream 100 bases:

>100_bases
TGGACGACGGGGAGCGCCACGTGATGTGTCGCTTCCGTTTCGCGCTTGCGTGACATTTTTCCAGCCAATAGGAGCCCGAA
TGAACGCCCCCGAATCGCAA

Product: transcription regulator protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcription Regulator Protein; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel; Transcriptional Regulator Protein LacI Family; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulatory Protein With Hth Domain

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MPEYEDPPTADTDTGINERIARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAASPTAVVLDKLAAGLGVSLASLFG
GEREGVPAQPLMRRAQQAQWRDPASGYVRRNLSPPDWPSPIQLVEVNFPAGARVAYETGGRENAMQQQVWVIDGRIDVML
GDQRHELHPGDCLAMRLDQPLIFSNPTSQAAHYVVAICDAPAVAGAWSA

Sequences:

>Translated_209_residues
MPEYEDPPTADTDTGINERIARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAASPTAVVLDKLAAGLGVSLASLFG
GEREGVPAQPLMRRAQQAQWRDPASGYVRRNLSPPDWPSPIQLVEVNFPAGARVAYETGGRENAMQQQVWVIDGRIDVML
GDQRHELHPGDCLAMRLDQPLIFSNPTSQAAHYVVAICDAPAVAGAWSA
>Mature_208_residues
PEYEDPPTADTDTGINERIARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAASPTAVVLDKLAAGLGVSLASLFGG
EREGVPAQPLMRRAQQAQWRDPASGYVRRNLSPPDWPSPIQLVEVNFPAGARVAYETGGRENAMQQQVWVIDGRIDVMLG
DQRHELHPGDCLAMRLDQPLIFSNPTSQAAHYVVAICDAPAVAGAWSA

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787704, Length=174, Percent_Identity=27.5862068965517, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22600; Mature: 22469

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEYEDPPTADTDTGINERIARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAASPT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCCH
AVVLDKLAAGLGVSLASLFGGEREGVPAQPLMRRAQQAQWRDPASGYVRRNLSPPDWPSP
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCC
IQLVEVNFPAGARVAYETGGRENAMQQQVWVIDGRIDVMLGDQRHELHPGDCLAMRLDQP
EEEEEEECCCCCEEEECCCCCCHHHHCEEEEECCEEEEEECCCCCCCCCCCEEEEECCCC
LIFSNPTSQAAHYVVAICDAPAVAGAWSA
EEECCCCHHHHEEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
PEYEDPPTADTDTGINERIARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAASPT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCCH
AVVLDKLAAGLGVSLASLFGGEREGVPAQPLMRRAQQAQWRDPASGYVRRNLSPPDWPSP
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCC
IQLVEVNFPAGARVAYETGGRENAMQQQVWVIDGRIDVMLGDQRHELHPGDCLAMRLDQP
EEEEEEECCCCCEEEECCCCCCHHHHCEEEEECCEEEEEECCCCCCCCCCCEEEEECCCC
LIFSNPTSQAAHYVVAICDAPAVAGAWSA
EEECCCCHHHHEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA