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The map label for this gene is ynfM [H]

Identifier: 17547788

GI number: 17547788

Start: 3307878

End: 3309164

Strand: Reverse

Name: ynfM [H]

Synonym: RSc3069

Alternate gene names: 17547788

Gene position: 3309164-3307878 (Counterclockwise)

Preceding gene: 17547790

Following gene: 17547787

Centisome position: 89.04

GC content: 72.49

Gene sequence:

>1287_bases
GTGAACGCTCCCGCCAGCTCGTCCGCCACGCCTGTCCCCACCGCCCACGTCACCCACGCCACGATGGAGCCCGCCGATCC
GGCGCGCTGGCTGGTGCGCGGCTCGCCGGGGTATCGCCGGGCCAACCTGGCGCTGTTCGCCGCCGGCTTCTCGACCTTCT
CGCTGTTGTATTGCGTGCAGCCGCTGATGCCGCTGCTGGGGCACGACTTCGGCCTGTCCCCCGCGCAGACGAGCCTGGTG
CTGTCGGCCACGACGATGCTGCTGGCCTTCGCCATCCTGTTCGCGGGGCTGCTGTCGGAGTCGATCCACCGCAAGACGCT
GATGGGCGTTTCGCTGGTGCTGTCCTCGGCGCTGACGGTGGCGGCGGCCGTGCTGCCCGGCTGGCAGGGGCTGCTGGCCA
CGCGCGCGGTGCTCGGCGTCGTGCTGGGCGGTGTGCCGGCGGTGGCGATGGCCTATCTGGCCGAAGAGGTGCATCCGCAG
GGCCTGGGCATGGCGATGGGGCTGTACGTGGGCGGCACCGCTTTCGGCGGCATGGCTGGGCGCGTGCTGACCGGCATGGT
GGCCGACTACGCCGGCTGGCGCGTCGCCATGGGCTTCATCGGGGCGCTGTGCCTGCTGGCGGCGCTGGCCTTTGCCTGGC
TGCTGCCGCCGTCGCGCCGGTTCGCGCCGCGCCGGGGTGTGGCGCTCGCCGATCTCTTCGATACGCTCGCCGAGCACCTG
CGCGAGCCCGGCCTGCGTGCGCTGTTCGCCATGGCCTTCCTGCTGATGGGCGGCTTTGTCACGATCTACAACTACGCCAG
CTACCGGCTGCTGAGCGCGCCGTATGCACTGAGCCATTCGGCGGTCGGGGCGATCTTCATGGTGTACCTGCTGGGCATCG
GCGCATCGACCTGGTTCGGGCGACTGGCCGATCGGCATGGCCGGGGCCGGGTGCTGCTGGCCGGCACGGCGGCGATGTCG
GCGGGCGTGTTGATGACGCTGGCGATGCCGCTGGGGCTGGTGATCGGCGGCATCGCGCTGCTGACCTTCGGTTTCTTCGG
CGCGCACGCGGTGGCGAGCGGCTGGGTCGGGCGCCGTGCCAGGCGGGCCAAGGGACAGGCGGCGGCGCTGTACTTGCTGG
CGTACTACCTCGGCTCGAGCATCGCCGGCACGGCGGGCGGCAAGCTCTACGCGCGGTGGGGCTGGCCTGGTGTGGTGGCG
CTGGTGACGGCGATGTTGGCCTGCGCCCTGCTGACGGCCGCATGGCTGTGGCGGCGCGCGCCGTTGCCGCCGGGCGCCGC
GCGCTGA

Upstream 100 bases:

>100_bases
ACCTGTCCGCCAGACAGCGAGCGCGATGCCGCATGGCGCGCTGCGGTGCGGAACGCGCGGCTGCGAACGATAATAGGCGG
TCCTCCTGGAATCGCCAGCC

Downstream 100 bases:

>100_bases
CACCGCGCGCTTCACCGGACGCCGGGATTGACGCCCCGGCAGGGAATTCGCGTATCGTGCCAGGGTCCGTGCCTGCACGA
TCGGGTTGCTCATCATGCGC

Product: transporter transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MNAPASSSATPVPTAHVTHATMEPADPARWLVRGSPGYRRANLALFAAGFSTFSLLYCVQPLMPLLGHDFGLSPAQTSLV
LSATTMLLAFAILFAGLLSESIHRKTLMGVSLVLSSALTVAAAVLPGWQGLLATRAVLGVVLGGVPAVAMAYLAEEVHPQ
GLGMAMGLYVGGTAFGGMAGRVLTGMVADYAGWRVAMGFIGALCLLAALAFAWLLPPSRRFAPRRGVALADLFDTLAEHL
REPGLRALFAMAFLLMGGFVTIYNYASYRLLSAPYALSHSAVGAIFMVYLLGIGASTWFGRLADRHGRGRVLLAGTAAMS
AGVLMTLAMPLGLVIGGIALLTFGFFGAHAVASGWVGRRARRAKGQAAALYLLAYYLGSSIAGTAGGKLYARWGWPGVVA
LVTAMLACALLTAAWLWRRAPLPPGAAR

Sequences:

>Translated_428_residues
MNAPASSSATPVPTAHVTHATMEPADPARWLVRGSPGYRRANLALFAAGFSTFSLLYCVQPLMPLLGHDFGLSPAQTSLV
LSATTMLLAFAILFAGLLSESIHRKTLMGVSLVLSSALTVAAAVLPGWQGLLATRAVLGVVLGGVPAVAMAYLAEEVHPQ
GLGMAMGLYVGGTAFGGMAGRVLTGMVADYAGWRVAMGFIGALCLLAALAFAWLLPPSRRFAPRRGVALADLFDTLAEHL
REPGLRALFAMAFLLMGGFVTIYNYASYRLLSAPYALSHSAVGAIFMVYLLGIGASTWFGRLADRHGRGRVLLAGTAAMS
AGVLMTLAMPLGLVIGGIALLTFGFFGAHAVASGWVGRRARRAKGQAAALYLLAYYLGSSIAGTAGGKLYARWGWPGVVA
LVTAMLACALLTAAWLWRRAPLPPGAAR
>Mature_428_residues
MNAPASSSATPVPTAHVTHATMEPADPARWLVRGSPGYRRANLALFAAGFSTFSLLYCVQPLMPLLGHDFGLSPAQTSLV
LSATTMLLAFAILFAGLLSESIHRKTLMGVSLVLSSALTVAAAVLPGWQGLLATRAVLGVVLGGVPAVAMAYLAEEVHPQ
GLGMAMGLYVGGTAFGGMAGRVLTGMVADYAGWRVAMGFIGALCLLAALAFAWLLPPSRRFAPRRGVALADLFDTLAEHL
REPGLRALFAMAFLLMGGFVTIYNYASYRLLSAPYALSHSAVGAIFMVYLLGIGASTWFGRLADRHGRGRVLLAGTAAMS
AGVLMTLAMPLGLVIGGIALLTFGFFGAHAVASGWVGRRARRAKGQAAALYLLAYYLGSSIAGTAGGKLYARWGWPGVVA
LVTAMLACALLTAAWLWRRAPLPPGAAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=395, Percent_Identity=46.8354430379747, Blast_Score=352, Evalue=4e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR005829 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44607; Mature: 44607

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPASSSATPVPTAHVTHATMEPADPARWLVRGSPGYRRANLALFAAGFSTFSLLYCVQ
CCCCCCCCCCCCCCCCEEECCCCCCCCHHHEEECCCCCCHHHHHHEEHHHHHHHHHHHHH
PLMPLLGHDFGLSPAQTSLVLSATTMLLAFAILFAGLLSESIHRKTLMGVSLVLSSALTV
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAVLPGWQGLLATRAVLGVVLGGVPAVAMAYLAEEVHPQGLGMAMGLYVGGTAFGGMAG
HHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHH
RVLTGMVADYAGWRVAMGFIGALCLLAALAFAWLLPPSRRFAPRRGVALADLFDTLAEHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
REPGLRALFAMAFLLMGGFVTIYNYASYRLLSAPYALSHSAVGAIFMVYLLGIGASTWFG
HCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
RLADRHGRGRVLLAGTAAMSAGVLMTLAMPLGLVIGGIALLTFGFFGAHAVASGWVGRRA
HHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRAKGQAAALYLLAYYLGSSIAGTAGGKLYARWGWPGVVALVTAMLACALLTAAWLWRRA
HHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
PLPPGAAR
CCCCCCCC
>Mature Secondary Structure
MNAPASSSATPVPTAHVTHATMEPADPARWLVRGSPGYRRANLALFAAGFSTFSLLYCVQ
CCCCCCCCCCCCCCCCEEECCCCCCCCHHHEEECCCCCCHHHHHHEEHHHHHHHHHHHHH
PLMPLLGHDFGLSPAQTSLVLSATTMLLAFAILFAGLLSESIHRKTLMGVSLVLSSALTV
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAVLPGWQGLLATRAVLGVVLGGVPAVAMAYLAEEVHPQGLGMAMGLYVGGTAFGGMAG
HHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHH
RVLTGMVADYAGWRVAMGFIGALCLLAALAFAWLLPPSRRFAPRRGVALADLFDTLAEHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
REPGLRALFAMAFLLMGGFVTIYNYASYRLLSAPYALSHSAVGAIFMVYLLGIGASTWFG
HCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
RLADRHGRGRVLLAGTAAMSAGVLMTLAMPLGLVIGGIALLTFGFFGAHAVASGWVGRRA
HHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRAKGQAAALYLLAYYLGSSIAGTAGGKLYARWGWPGVVALVTAMLACALLTAAWLWRRA
HHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
PLPPGAAR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]