| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is ybiO [H]
Identifier: 17547787
GI number: 17547787
Start: 3305513
End: 3307783
Strand: Reverse
Name: ybiO [H]
Synonym: RSc3068
Alternate gene names: 17547787
Gene position: 3307783-3305513 (Counterclockwise)
Preceding gene: 17547788
Following gene: 17547783
Centisome position: 89.0
GC content: 71.69
Gene sequence:
>2271_bases ATGCGCACTTTCCTCCTGCTGTTGATGCAGCGGCTGTCGCCGGCCGTGTTCCTGCTGTTGTTTTGCATGTCGGGCGGTGC CGGCGCGGCGCCCGCCTCCTTTGCCAAGCTGGCCGGGCTGCCGTCGGCCACCGGCAGCGCTTCGAGCCCCGTGGCCACGC CCGAGCAGACGCGCGCCTCGCTCGACGCCGTCATTACGTTGCTCGACAGCGACCAGCAGCGCACCGCGCTCCTCGGCCAA CTCAAGCAATTGCGCGACGGCATGGCCGCGCAGCAGACCGCCCAGGCCCAGCAGGCGCCCGGGTTGCTGGGGGCGGTTGC CTCGCTGATCGAAAACGGCTCGCTGCAGGCCGATGCCGAGGCTGGCGCGCCGCGCTACTGGCTGCACCGCGTCGAAGCCG CCGACGACAACCTCAGCCTGCTCGCCGCCCCCGAGCGGCGCCTGCGCGTGCTGGCCGATTTCGCCGGCACCGTCGCCGTC TGGGCGGCCATCGCCGGCGGGCTGCTGGGGCTGGGCTGGGGCATCCGCCGCGTGTTCGGGCTGAAGGCGGGCCTCGGGCC GCATCCGACCACGCGCGCGCTGTTCGTCGATGCGCTGCGCAAGATCGGTCCGTGGGCGGCATCGTTCGCGGTGCTGATGC GCCTGGAGCACGAGGCGACACCGGGCTTCGTGCTCGCGCTGGTGTTGGCCTACGCCATCGTGTGGGGGGCGATCGTGACG GCCGCCGTGGCGATGCTGTTCTCGCTGTTCGCCGGCAGCGCGCACCGGCGCGTGGCGGTGGAGCTCCTGCTCCGGCGCGG CATGTGGCCGATCTTTGTGGCGGCCAGCCTGGGCGCGTGCGGCGATGCGCTGGTCGATCCGCGGGTTGCGCTGGTGCTCG GCGGCGCGCTGAGCCTGCTGCTGGCGACGGTCTGCAATGCCGCTTCGTCGCTGATGCTGGCGGCGGGCGCGCTGTGGCTG CGCCGCCCGATCGGCCAGCTGATCGCCAACCGTTCGTTCGAGCAGCGCAACGGTCAGCATACGGGCAACCAGTTCCGCCG CGCGGTCGCGGTGCTCTGGCCGGTGCCGGTGGTGGTGCTGGCCGGCGCCACCGTGCTGGCGACGCTGGCCCTGCCGGACA ACGTCGACGTGGTGTCGCGGCGCGCGGTGATGACCTCGCTGCTGCTGGCGGCGGCCTTCCTGCTGTCGGCTGTGGTGCGG CCGCGCGCGCACTGGCACCTGCACGTGCGGTTCGGGCGCACGTCGCCGTATCTCGAGCGGCTCAAGCATTTCTTCTCGGC GCTGGTGCAGCTGGCCATCTGGGTGGCGTTTCTCGAGCTGGTGACGCGGGTGTGGGGCCACACGCTGGCGGAGCTGCTGC GCAGTTCGGTCAACGGCCGCCGTATCGCCGATGCGCTGGTCGGGCTGATCGGCACGGTGTTCTCCACCTGGCTGGCGTGG ATCCTGCTCGATACCGCCATTCTGCAGGCGCTGTCGCCCGCCGGCGGACGCGCGCGCCTGCAGCCGAGCACGCGGGCGCG CACCATCCTGCCGCTGTTGCGCAACGGCCTGAAGGTGACGCTGGTGGTGACTGCCGGCATCGGCGTGCTGGCCAACCTGG GCGTGAACGTGACGCCGTTGGTGGCCGGCGCCGGGGTGATCGGCCTGGCGGTGGGGTTCGGCGCGCAGTCGCTGGCGCAG GATCTGATCACCGGCATCTTCATCCTGATGGAAGACACCATCAGCGTGGGCGATACGGTGGACGTGGGCGTGGCCACCGG CACCGTCATCAGCCTGACCATCCGCACCGTGCGGCTGCGCGACGGCGTTGGGGCTATCCACTCGATTCCGTTCAGCCAGA TCAAGACCGTGCGCAACCTGTCGCGCGATTACTCGTTCGCCGATTTCGAAGTGCGCGTGGCGATGGACGCCGACCCCAGG CAGGCCATCGACCTGGTGCGCGAGGCCGCTGCCCGCACCGCCGGGGATGTCCGCTTCGAGCGCATCCTGATCGGCGTGCC CGAGGTGTTCGGGCTGGATCGCTTCGAGGGCGGCGCGATGATCGTCAAGGGGCGCTTCAAGACGCGGCCGCAGAAGCAGG CCGATGTGCTGCGCGCCTTCAACGTGGTGCTCAAGGAGGGGTTCGATGCGGCCGGCGTGCCGCTGGCGATGCCGGGCACG GTGCTGCGTCCGTCGCCCGCGCTGGAGCAGTGGATGGCACGCGCGGGCGCCCTGCCGGGCGATGCCGACCCTGCGCCGGT GCCGCAGTCGCCGCCCGCCGCGCCGGCCTGA
Upstream 100 bases:
>100_bases CGCTGACACCGCGCGCTTCACCGGACGCCGGGATTGACGCCCCGGCAGGGAATTCGCGTATCGTGCCAGGGTCCGTGCCT GCACGATCGGGTTGCTCATC
Downstream 100 bases:
>100_bases CGCGGCCGGCCTCGCGGGCTACAGCCGGGCCACCGCCAGCCCGATGGCCAGCAGGCTGCCGAGCCCGAAGATCGTCCAGC CGACGGTGCGCCGCTTGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 756; Mature: 756
Protein sequence:
>756_residues MRTFLLLLMQRLSPAVFLLLFCMSGGAGAAPASFAKLAGLPSATGSASSPVATPEQTRASLDAVITLLDSDQQRTALLGQ LKQLRDGMAAQQTAQAQQAPGLLGAVASLIENGSLQADAEAGAPRYWLHRVEAADDNLSLLAAPERRLRVLADFAGTVAV WAAIAGGLLGLGWGIRRVFGLKAGLGPHPTTRALFVDALRKIGPWAASFAVLMRLEHEATPGFVLALVLAYAIVWGAIVT AAVAMLFSLFAGSAHRRVAVELLLRRGMWPIFVAASLGACGDALVDPRVALVLGGALSLLLATVCNAASSLMLAAGALWL RRPIGQLIANRSFEQRNGQHTGNQFRRAVAVLWPVPVVVLAGATVLATLALPDNVDVVSRRAVMTSLLLAAAFLLSAVVR PRAHWHLHVRFGRTSPYLERLKHFFSALVQLAIWVAFLELVTRVWGHTLAELLRSSVNGRRIADALVGLIGTVFSTWLAW ILLDTAILQALSPAGGRARLQPSTRARTILPLLRNGLKVTLVVTAGIGVLANLGVNVTPLVAGAGVIGLAVGFGAQSLAQ DLITGIFILMEDTISVGDTVDVGVATGTVISLTIRTVRLRDGVGAIHSIPFSQIKTVRNLSRDYSFADFEVRVAMDADPR QAIDLVREAAARTAGDVRFERILIGVPEVFGLDRFEGGAMIVKGRFKTRPQKQADVLRAFNVVLKEGFDAAGVPLAMPGT VLRPSPALEQWMARAGALPGDADPAPVPQSPPAAPA
Sequences:
>Translated_756_residues MRTFLLLLMQRLSPAVFLLLFCMSGGAGAAPASFAKLAGLPSATGSASSPVATPEQTRASLDAVITLLDSDQQRTALLGQ LKQLRDGMAAQQTAQAQQAPGLLGAVASLIENGSLQADAEAGAPRYWLHRVEAADDNLSLLAAPERRLRVLADFAGTVAV WAAIAGGLLGLGWGIRRVFGLKAGLGPHPTTRALFVDALRKIGPWAASFAVLMRLEHEATPGFVLALVLAYAIVWGAIVT AAVAMLFSLFAGSAHRRVAVELLLRRGMWPIFVAASLGACGDALVDPRVALVLGGALSLLLATVCNAASSLMLAAGALWL RRPIGQLIANRSFEQRNGQHTGNQFRRAVAVLWPVPVVVLAGATVLATLALPDNVDVVSRRAVMTSLLLAAAFLLSAVVR PRAHWHLHVRFGRTSPYLERLKHFFSALVQLAIWVAFLELVTRVWGHTLAELLRSSVNGRRIADALVGLIGTVFSTWLAW ILLDTAILQALSPAGGRARLQPSTRARTILPLLRNGLKVTLVVTAGIGVLANLGVNVTPLVAGAGVIGLAVGFGAQSLAQ DLITGIFILMEDTISVGDTVDVGVATGTVISLTIRTVRLRDGVGAIHSIPFSQIKTVRNLSRDYSFADFEVRVAMDADPR QAIDLVREAAARTAGDVRFERILIGVPEVFGLDRFEGGAMIVKGRFKTRPQKQADVLRAFNVVLKEGFDAAGVPLAMPGT VLRPSPALEQWMARAGALPGDADPAPVPQSPPAAPA >Mature_756_residues MRTFLLLLMQRLSPAVFLLLFCMSGGAGAAPASFAKLAGLPSATGSASSPVATPEQTRASLDAVITLLDSDQQRTALLGQ LKQLRDGMAAQQTAQAQQAPGLLGAVASLIENGSLQADAEAGAPRYWLHRVEAADDNLSLLAAPERRLRVLADFAGTVAV WAAIAGGLLGLGWGIRRVFGLKAGLGPHPTTRALFVDALRKIGPWAASFAVLMRLEHEATPGFVLALVLAYAIVWGAIVT AAVAMLFSLFAGSAHRRVAVELLLRRGMWPIFVAASLGACGDALVDPRVALVLGGALSLLLATVCNAASSLMLAAGALWL RRPIGQLIANRSFEQRNGQHTGNQFRRAVAVLWPVPVVVLAGATVLATLALPDNVDVVSRRAVMTSLLLAAAFLLSAVVR PRAHWHLHVRFGRTSPYLERLKHFFSALVQLAIWVAFLELVTRVWGHTLAELLRSSVNGRRIADALVGLIGTVFSTWLAW ILLDTAILQALSPAGGRARLQPSTRARTILPLLRNGLKVTLVVTAGIGVLANLGVNVTPLVAGAGVIGLAVGFGAQSLAQ DLITGIFILMEDTISVGDTVDVGVATGTVISLTIRTVRLRDGVGAIHSIPFSQIKTVRNLSRDYSFADFEVRVAMDADPR QAIDLVREAAARTAGDVRFERILIGVPEVFGLDRFEGGAMIVKGRFKTRPQKQADVLRAFNVVLKEGFDAAGVPLAMPGT VLRPSPALEQWMARAGALPGDADPAPVPQSPPAAPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI87081787, Length=296, Percent_Identity=34.1216216216216, Blast_Score=133, Evalue=4e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 79871; Mature: 79871
Theoretical pI: Translated: 11.25; Mature: 11.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTFLLLLMQRLSPAVFLLLFCMSGGAGAAPASFAKLAGLPSATGSASSPVATPEQTRAS CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH LDAVITLLDSDQQRTALLGQLKQLRDGMAAQQTAQAQQAPGLLGAVASLIENGSLQADAE HHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC AGAPRYWLHRVEAADDNLSLLAAPERRLRVLADFAGTVAVWAAIAGGLLGLGWGIRRVFG CCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKAGLGPHPTTRALFVDALRKIGPWAASFAVLMRLEHEATPGFVLALVLAYAIVWGAIVT HHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH AAVAMLFSLFAGSAHRRVAVELLLRRGMWPIFVAASLGACGDALVDPRVALVLGGALSLL HHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH LATVCNAASSLMLAAGALWLRRPIGQLIANRSFEQRNGQHTGNQFRRAVAVLWPVPVVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH AGATVLATLALPDNVDVVSRRAVMTSLLLAAAFLLSAVVRPRAHWHLHVRFGRTSPYLER HCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHH LKHFFSALVQLAIWVAFLELVTRVWGHTLAELLRSSVNGRRIADALVGLIGTVFSTWLAW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH ILLDTAILQALSPAGGRARLQPSTRARTILPLLRNGLKVTLVVTAGIGVLANLGVNVTPL HHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCCCHH VAGAGVIGLAVGFGAQSLAQDLITGIFILMEDTISVGDTVDVGVATGTVISLTIRTVRLR HHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEC DGVGAIHSIPFSQIKTVRNLSRDYSFADFEVRVAMDADPRQAIDLVREAAARTAGDVRFE CCCCHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHH RILIGVPEVFGLDRFEGGAMIVKGRFKTRPQKQADVLRAFNVVLKEGFDAAGVPLAMPGT HHEEECHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCC VLRPSPALEQWMARAGALPGDADPAPVPQSPPAAPA CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRTFLLLLMQRLSPAVFLLLFCMSGGAGAAPASFAKLAGLPSATGSASSPVATPEQTRAS CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH LDAVITLLDSDQQRTALLGQLKQLRDGMAAQQTAQAQQAPGLLGAVASLIENGSLQADAE HHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC AGAPRYWLHRVEAADDNLSLLAAPERRLRVLADFAGTVAVWAAIAGGLLGLGWGIRRVFG CCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKAGLGPHPTTRALFVDALRKIGPWAASFAVLMRLEHEATPGFVLALVLAYAIVWGAIVT HHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH AAVAMLFSLFAGSAHRRVAVELLLRRGMWPIFVAASLGACGDALVDPRVALVLGGALSLL HHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH LATVCNAASSLMLAAGALWLRRPIGQLIANRSFEQRNGQHTGNQFRRAVAVLWPVPVVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH AGATVLATLALPDNVDVVSRRAVMTSLLLAAAFLLSAVVRPRAHWHLHVRFGRTSPYLER HCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHH LKHFFSALVQLAIWVAFLELVTRVWGHTLAELLRSSVNGRRIADALVGLIGTVFSTWLAW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH ILLDTAILQALSPAGGRARLQPSTRARTILPLLRNGLKVTLVVTAGIGVLANLGVNVTPL HHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCCCHH VAGAGVIGLAVGFGAQSLAQDLITGIFILMEDTISVGDTVDVGVATGTVISLTIRTVRLR HHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEC DGVGAIHSIPFSQIKTVRNLSRDYSFADFEVRVAMDADPRQAIDLVREAAARTAGDVRFE CCCCHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHH RILIGVPEVFGLDRFEGGAMIVKGRFKTRPQKQADVLRAFNVVLKEGFDAAGVPLAMPGT HHEEECHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCC VLRPSPALEQWMARAGALPGDADPAPVPQSPPAAPA CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]