| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is mrcA [H]
Identifier: 17547695
GI number: 17547695
Start: 3208628
End: 3211033
Strand: Direct
Name: mrcA [H]
Synonym: RSc2976
Alternate gene names: 17547695
Gene position: 3208628-3211033 (Clockwise)
Preceding gene: 17547686
Following gene: 17547697
Centisome position: 86.34
GC content: 66.83
Gene sequence:
>2406_bases ATGGCTACTGCCCAAACCGCCCCTGCCTCGCCCAAGCCGCCCAAAGCCCGCCGCCCGCTGTGGCTGCGCCTGATCCTGTG GATGCTTGGCCTGTTCGTCGCCATGGGGGTCGTGGGAGCGCTGCTGTTGGGCTATGCCCTGCTGGTCGCCGCGCCCAACC TGCCGTCGCTGGATGCGATCACCGACTACCGCCCGAAGATCCCGCTGCGCGTCTACACTGCCGACAACGTCCTGATCGGC GAATTCGGCGAAGAGCGCCGCAGCTTCGTGCCGATCACGCAGATGCCCGACGTGATGAAACGCGCCGTGCTCGCCATCGA GGATGACCGCTTCTACGAGCACGGCGGCGTCGACTTCATCGGCGTGCTGCGCGCGGGGCTGGCCAACCTGCACGGCGGCC TGTCGCAGGGCGCCTCGACCATCACCATGCAGGTGGCGCGCAACTTCTTCCTCTCCAGCGAGAAGACGTACACGCGCAAG ATCTACGAGATGCTGCTGTCCTACAAGATCGAGGCCAGCCTGACGAAGGACCAGATCCTCGAGCTCTACATGAACCAGAT CTACCTCGGCCAGCGCGCCTACGGCTTTGCCAGCGCCGAGCAGATCTACTTCGGCAAGAACATCAAGGACATCACGCTGG CCGAGGCCGCCATGCTGGCCGGGCTGCCCAAGGCGCCGTCGGCATACAACCCGGTGGTGAACCCCAAGCGCGCCAAGATC CGCCAGGAGTACATCCTGCAGCGCATGCGCGACCTGCACTACATCACGCCGGAGCAGTACGCGCAGGCCATCCACGAACA GCTGCCCGTGCGCGGCGAGGGCCATGAATTCGACGTGCACGCCGAATACGTGGCGGAAATGGTGCGCCAGCTGATGTACG CGCAGTACCGCGAAGAGACGTATACGCGCGGCCTGAACGTCTACACCACGCTGCGCAAGGGCGACCAGGAAGTCGCCTAT GAATCGGTGCGGCGCGGCATCCTCGACTATGAGCGCCGCCACGGCTATCGCGGCCCGGAAGCTTTCATCGACCTGCCCGC CGATGCCGACGAGCGCGAGCAGGCCATCGACGACGCGCTGGTCGAGCACCCCAACAGCGACGACCTGCAATCGGCCGTGG TGGTCAGCGCGGCGCCCAAGCTGGTGCGGGCGACCATGCTGTCGGGCGAGACCATCGACCTCGCCGGCGACGGCCTGCGG TTCGCGCAGGCGGCGCTGTCGGCCAACGCCCAGCCCAAGATCAAGCTGCGCCCGGGCGCGATCATCCGCGTGATCCAGGA CCCGAAGACGGGCAAATGGTCGATCACGCAACTGCCGGAAGTGGCCTCGGGCTTCGTGTCGCTCGACCCGCAGACCGGCG GGATCTATTCGATGGTCGGCGGCTTCGACTTCAACCGCAGCAAGTTCAACCACGTCACGCAGGCCTGGCGCCAGCCGGGT TCGAGCTTCAAGCCGTTCATCTACTCGGCGGCGGTGGACAAGGGCTTCTCGCCGTCGACCGTCATCAACGACGCACCGCT GTCGATCCCGACCGGCGACACCGGCGGCCAGCTGTGGGAGCCGAAGAACTACGGCGGCGGCTACGACGGCCCGATGACGA TGCGCCGCGCGCTGCAGAAGTCGAAGAACCTCGTTTCCGTGCGCATCCTGCGGACCATCGGTACGCAGTACGCGCAGCAG TACATCACCCGCTTCGGCTTCGAGCCCGACAAGCACCCGGCCTACCTGCCGATGGCGCTCGGCGCCGGCTCGGTGACGGT GCTGCAGATGGCCGGCGCATACTCGGTGTTCGCCAACGGCGGCTACCGCGTCAACCCGTACATCATCGACCGCGTGACCG ATGCGCGCGGCACCGTGATCCAGCAAACCCACCCGATGACGGCCAGCAAGGACGCGGTGCGCGTGATCGATCCGCGCAAC GACTTCATCATGGATTCGCTGCTGCGCAGCGTGGTGTCGGGCGGCACCGGCTACCTGGCCAAGCAGAAGCTGGGCCGCAG CGACATGGCCGGCAAGACGGGCACGACCAACGATTCGTTCGATGCCTGGTTCTGCGGCTACACGCCCAAGCTGGTGGGCG TGGCCTGGATCGGCTACGACAACCCGCGCAGCCTCGGCGACCGCGAAACCGGCGGCGGCCTGGCCTTGCCGATCTGGATC AATTACATGAGCTACGCGCTCAAGGGCCAGCCGGAAACCGAGCGCCAGCCGCCCGAAGGCGTGGTGCAGATGGCTGGCGA CTGGGCCTACGAGGAATACGCCAACGGCCAGGGCGTCGCCTCGGTCGGCCTGGGCGATGCCCTGCCGGGCGGTCCGCCGG CATCGGGCCCCGAAGCCGCGCCGAGCCTGGCGCCGACGCCTGAGCAGGAGAAACAGAAGATTCTCGACATGTTCCGCGGC AACTGA
Upstream 100 bases:
>100_bases AGGCCCGCGCGACACCGGTTACGCGCTGTTACGCCACACCGGCCGGACCCCGCCGACGCCGACGATATAATCGCCGCCAC GCTGACAGACACCCCTCGTA
Downstream 100 bases:
>100_bases CGTGCGTCACGCGCCGACAAAAAAGCCGCCCGATCGGGCGGCTTTTCTTTTGCGGTGGCGCGGCGGCGGCTCAGTCCGCC ACCAGCGTGACATCGACCTC
Product: penicillin-binding 1 transmembrane protein
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 801; Mature: 800
Protein sequence:
>801_residues MATAQTAPASPKPPKARRPLWLRLILWMLGLFVAMGVVGALLLGYALLVAAPNLPSLDAITDYRPKIPLRVYTADNVLIG EFGEERRSFVPITQMPDVMKRAVLAIEDDRFYEHGGVDFIGVLRAGLANLHGGLSQGASTITMQVARNFFLSSEKTYTRK IYEMLLSYKIEASLTKDQILELYMNQIYLGQRAYGFASAEQIYFGKNIKDITLAEAAMLAGLPKAPSAYNPVVNPKRAKI RQEYILQRMRDLHYITPEQYAQAIHEQLPVRGEGHEFDVHAEYVAEMVRQLMYAQYREETYTRGLNVYTTLRKGDQEVAY ESVRRGILDYERRHGYRGPEAFIDLPADADEREQAIDDALVEHPNSDDLQSAVVVSAAPKLVRATMLSGETIDLAGDGLR FAQAALSANAQPKIKLRPGAIIRVIQDPKTGKWSITQLPEVASGFVSLDPQTGGIYSMVGGFDFNRSKFNHVTQAWRQPG SSFKPFIYSAAVDKGFSPSTVINDAPLSIPTGDTGGQLWEPKNYGGGYDGPMTMRRALQKSKNLVSVRILRTIGTQYAQQ YITRFGFEPDKHPAYLPMALGAGSVTVLQMAGAYSVFANGGYRVNPYIIDRVTDARGTVIQQTHPMTASKDAVRVIDPRN DFIMDSLLRSVVSGGTGYLAKQKLGRSDMAGKTGTTNDSFDAWFCGYTPKLVGVAWIGYDNPRSLGDRETGGGLALPIWI NYMSYALKGQPETERQPPEGVVQMAGDWAYEEYANGQGVASVGLGDALPGGPPASGPEAAPSLAPTPEQEKQKILDMFRG N
Sequences:
>Translated_801_residues MATAQTAPASPKPPKARRPLWLRLILWMLGLFVAMGVVGALLLGYALLVAAPNLPSLDAITDYRPKIPLRVYTADNVLIG EFGEERRSFVPITQMPDVMKRAVLAIEDDRFYEHGGVDFIGVLRAGLANLHGGLSQGASTITMQVARNFFLSSEKTYTRK IYEMLLSYKIEASLTKDQILELYMNQIYLGQRAYGFASAEQIYFGKNIKDITLAEAAMLAGLPKAPSAYNPVVNPKRAKI RQEYILQRMRDLHYITPEQYAQAIHEQLPVRGEGHEFDVHAEYVAEMVRQLMYAQYREETYTRGLNVYTTLRKGDQEVAY ESVRRGILDYERRHGYRGPEAFIDLPADADEREQAIDDALVEHPNSDDLQSAVVVSAAPKLVRATMLSGETIDLAGDGLR FAQAALSANAQPKIKLRPGAIIRVIQDPKTGKWSITQLPEVASGFVSLDPQTGGIYSMVGGFDFNRSKFNHVTQAWRQPG SSFKPFIYSAAVDKGFSPSTVINDAPLSIPTGDTGGQLWEPKNYGGGYDGPMTMRRALQKSKNLVSVRILRTIGTQYAQQ YITRFGFEPDKHPAYLPMALGAGSVTVLQMAGAYSVFANGGYRVNPYIIDRVTDARGTVIQQTHPMTASKDAVRVIDPRN DFIMDSLLRSVVSGGTGYLAKQKLGRSDMAGKTGTTNDSFDAWFCGYTPKLVGVAWIGYDNPRSLGDRETGGGLALPIWI NYMSYALKGQPETERQPPEGVVQMAGDWAYEEYANGQGVASVGLGDALPGGPPASGPEAAPSLAPTPEQEKQKILDMFRG N >Mature_800_residues ATAQTAPASPKPPKARRPLWLRLILWMLGLFVAMGVVGALLLGYALLVAAPNLPSLDAITDYRPKIPLRVYTADNVLIGE FGEERRSFVPITQMPDVMKRAVLAIEDDRFYEHGGVDFIGVLRAGLANLHGGLSQGASTITMQVARNFFLSSEKTYTRKI YEMLLSYKIEASLTKDQILELYMNQIYLGQRAYGFASAEQIYFGKNIKDITLAEAAMLAGLPKAPSAYNPVVNPKRAKIR QEYILQRMRDLHYITPEQYAQAIHEQLPVRGEGHEFDVHAEYVAEMVRQLMYAQYREETYTRGLNVYTTLRKGDQEVAYE SVRRGILDYERRHGYRGPEAFIDLPADADEREQAIDDALVEHPNSDDLQSAVVVSAAPKLVRATMLSGETIDLAGDGLRF AQAALSANAQPKIKLRPGAIIRVIQDPKTGKWSITQLPEVASGFVSLDPQTGGIYSMVGGFDFNRSKFNHVTQAWRQPGS SFKPFIYSAAVDKGFSPSTVINDAPLSIPTGDTGGQLWEPKNYGGGYDGPMTMRRALQKSKNLVSVRILRTIGTQYAQQY ITRFGFEPDKHPAYLPMALGAGSVTVLQMAGAYSVFANGGYRVNPYIIDRVTDARGTVIQQTHPMTASKDAVRVIDPRND FIMDSLLRSVVSGGTGYLAKQKLGRSDMAGKTGTTNDSFDAWFCGYTPKLVGVAWIGYDNPRSLGDRETGGGLALPIWIN YMSYALKGQPETERQPPEGVVQMAGDWAYEEYANGQGVASVGLGDALPGGPPASGPEAAPSLAPTPEQEKQKILDMFRGN
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=622, Percent_Identity=41.9614147909968, Blast_Score=479, Evalue=1e-136, Organism=Escherichia coli, GI1786343, Length=249, Percent_Identity=36.9477911646586, Blast_Score=146, Evalue=5e-36, Organism=Escherichia coli, GI1788867, Length=237, Percent_Identity=32.9113924050633, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI1789601, Length=165, Percent_Identity=33.9393939393939, Blast_Score=87, Evalue=6e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 88059; Mature: 87928
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATAQTAPASPKPPKARRPLWLRLILWMLGLFVAMGVVGALLLGYALLVAAPNLPSLDAI CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC TDYRPKIPLRVYTADNVLIGEFGEERRSFVPITQMPDVMKRAVLAIEDDRFYEHGGVDFI CCCCCCCCEEEEECCCEEEECCCHHHHCCCCHHCCHHHHHHHHHEEECCCCCCCCCCHHH GVLRAGLANLHGGLSQGASTITMQVARNFFLSSEKTYTRKIYEMLLSYKIEASLTKDQIL HHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHH ELYMNQIYLGQRAYGFASAEQIYFGKNIKDITLAEAAMLAGLPKAPSAYNPVVNPKRAKI HHHHHHHHHCCHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH RQEYILQRMRDLHYITPEQYAQAIHEQLPVRGEGHEFDVHAEYVAEMVRQLMYAQYREET HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHH YTRGLNVYTTLRKGDQEVAYESVRRGILDYERRHGYRGPEAFIDLPADADEREQAIDDAL HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCHHHHHHHHHH VEHPNSDDLQSAVVVSAAPKLVRATMLSGETIDLAGDGLRFAQAALSANAQPKIKLRPGA HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCEEECCCE IIRVIQDPKTGKWSITQLPEVASGFVSLDPQTGGIYSMVGGFDFNRSKFNHVTQAWRQPG EEEEEECCCCCCEEHHHCHHHHCCCEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCC SSFKPFIYSAAVDKGFSPSTVINDAPLSIPTGDTGGQLWEPKNYGGGYDGPMTMRRALQK CCCCCCEEHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH SKNLVSVRILRTIGTQYAQQYITRFGFEPDKHPAYLPMALGAGSVTVLQMAGAYSVFANG HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCCEEEECC GYRVNPYIIDRVTDARGTVIQQTHPMTASKDAVRVIDPRNDFIMDSLLRSVVSGGTGYLA CEEECCEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHH KQKLGRSDMAGKTGTTNDSFDAWFCGYTPKLVGVAWIGYDNPRSLGDRETGGGLALPIWI HHHCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEHHHHH NYMSYALKGQPETERQPPEGVVQMAGDWAYEEYANGQGVASVGLGDALPGGPPASGPEAA HHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCC PSLAPTPEQEKQKILDMFRGN CCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure ATAQTAPASPKPPKARRPLWLRLILWMLGLFVAMGVVGALLLGYALLVAAPNLPSLDAI CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC TDYRPKIPLRVYTADNVLIGEFGEERRSFVPITQMPDVMKRAVLAIEDDRFYEHGGVDFI CCCCCCCCEEEEECCCEEEECCCHHHHCCCCHHCCHHHHHHHHHEEECCCCCCCCCCHHH GVLRAGLANLHGGLSQGASTITMQVARNFFLSSEKTYTRKIYEMLLSYKIEASLTKDQIL HHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHH ELYMNQIYLGQRAYGFASAEQIYFGKNIKDITLAEAAMLAGLPKAPSAYNPVVNPKRAKI HHHHHHHHHCCHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH RQEYILQRMRDLHYITPEQYAQAIHEQLPVRGEGHEFDVHAEYVAEMVRQLMYAQYREET HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHH YTRGLNVYTTLRKGDQEVAYESVRRGILDYERRHGYRGPEAFIDLPADADEREQAIDDAL HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCHHHHHHHHHH VEHPNSDDLQSAVVVSAAPKLVRATMLSGETIDLAGDGLRFAQAALSANAQPKIKLRPGA HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCEEECCCE IIRVIQDPKTGKWSITQLPEVASGFVSLDPQTGGIYSMVGGFDFNRSKFNHVTQAWRQPG EEEEEECCCCCCEEHHHCHHHHCCCEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCC SSFKPFIYSAAVDKGFSPSTVINDAPLSIPTGDTGGQLWEPKNYGGGYDGPMTMRRALQK CCCCCCEEHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH SKNLVSVRILRTIGTQYAQQYITRFGFEPDKHPAYLPMALGAGSVTVLQMAGAYSVFANG HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCCEEEECC GYRVNPYIIDRVTDARGTVIQQTHPMTASKDAVRVIDPRNDFIMDSLLRSVVSGGTGYLA CEEECCEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHH KQKLGRSDMAGKTGTTNDSFDAWFCGYTPKLVGVAWIGYDNPRSLGDRETGGGLALPIWI HHHCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEHHHHH NYMSYALKGQPETERQPPEGVVQMAGDWAYEEYANGQGVASVGLGDALPGGPPASGPEAA HHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCC PSLAPTPEQEKQKILDMFRGN CCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA