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The map label for this gene is vacJ [C]

Identifier: 17547678

GI number: 17547678

Start: 3187316

End: 3188125

Strand: Reverse

Name: vacJ [C]

Synonym: RSc2959

Alternate gene names: 17547678

Gene position: 3188125-3187316 (Counterclockwise)

Preceding gene: 17547679

Following gene: 17547677

Centisome position: 85.79

GC content: 66.42

Gene sequence:

>810_bases
ATGAGAACAACAACATCGAATCGGACCCTGCGCGGCCTTGCGCTGGGCATGGCGGCAAGCGCCGTCCTGCTCGCGGGCTG
CGCCACCGGGCCCAACGCCAATCCGGCCGACCCGATCGAGCCGTTCAACCGCGAAGTCTTCCGCATCAACGACGATCTCG
ACAAGGGCGTGCTCAAGCCCGTTGCACAGACGTATGTCGACGTGGTGCCGTCGCCGGCGCGCACGGCGGTGTCGAATTTC
TTCTCCAACGCGGGTGACGTCTATTCGGCGGTCAACAACCTGCTGCAGCTGAAGGGTACGGCCGCGCTGGAAGACACCAT
GCGGGTGGCCATCAACACCGTCCTGGGCCTCGGCGGCCTGATCGACATCGCGTCGGACGCCGGCTTGCCGAAGCACAAGG
AAGACTTCGGCCAGACCCTCGGCGTGTGGGGCGTGCCGGCCGGTGCGTACATCGTCTGGCCGCTGCTGGGTCCGAGCACC
GTGCGCGACACCGCGGGCTTCCTGGTCGACTGGCAGCTGGATCCGCTCACGTACTTCAACAACAGCGCGGTCACCTATTC
GCTGGCGGCCCTGCGCGTGGTCGATGCGCGCGCGGGCCTGCTGGGTGTGGGCAATGTGCTGGAAGAGGCGGCGGTCGACA
AGTACACCTTCATGCGCGATGCCTATCTGCAGCGCCGCCGCTACCTGATCTACGACGGCAACCTGCCCGAGGACACCGAT
GGCAAGAATCCTCCGGAAGGGGCCGAACAGGGCGGGAGCGTGTCGCCGTACCATCGCTTCACCCCCAACTGGCCGGTGTT
CCGCCGCTGA

Upstream 100 bases:

>100_bases
CCAGTTCCTTTATAGCAAGGCGGCGGACGCCGGCGCGGGCAATGCCGGCGGTGGTGCCGGCAAGCCGGCCGAGAGCAGTG
GGAGTGGGAGTAAATAAATC

Downstream 100 bases:

>100_bases
CCAGTCACACGTAACAGCCACGCCTCAATGGTGACAAGGCGTAAAAGCGGCCGCTCCCCGTCGAACTTGGCCGGGAGCGC
CCGGTTCTAACCGCCAGCAA

Product: lipoprotein precursor (VACJ) transmembrane

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MRTTTSNRTLRGLALGMAASAVLLAGCATGPNANPADPIEPFNREVFRINDDLDKGVLKPVAQTYVDVVPSPARTAVSNF
FSNAGDVYSAVNNLLQLKGTAALEDTMRVAINTVLGLGGLIDIASDAGLPKHKEDFGQTLGVWGVPAGAYIVWPLLGPST
VRDTAGFLVDWQLDPLTYFNNSAVTYSLAALRVVDARAGLLGVGNVLEEAAVDKYTFMRDAYLQRRRYLIYDGNLPEDTD
GKNPPEGAEQGGSVSPYHRFTPNWPVFRR

Sequences:

>Translated_269_residues
MRTTTSNRTLRGLALGMAASAVLLAGCATGPNANPADPIEPFNREVFRINDDLDKGVLKPVAQTYVDVVPSPARTAVSNF
FSNAGDVYSAVNNLLQLKGTAALEDTMRVAINTVLGLGGLIDIASDAGLPKHKEDFGQTLGVWGVPAGAYIVWPLLGPST
VRDTAGFLVDWQLDPLTYFNNSAVTYSLAALRVVDARAGLLGVGNVLEEAAVDKYTFMRDAYLQRRRYLIYDGNLPEDTD
GKNPPEGAEQGGSVSPYHRFTPNWPVFRR
>Mature_269_residues
MRTTTSNRTLRGLALGMAASAVLLAGCATGPNANPADPIEPFNREVFRINDDLDKGVLKPVAQTYVDVVPSPARTAVSNF
FSNAGDVYSAVNNLLQLKGTAALEDTMRVAINTVLGLGGLIDIASDAGLPKHKEDFGQTLGVWGVPAGAYIVWPLLGPST
VRDTAGFLVDWQLDPLTYFNNSAVTYSLAALRVVDARAGLLGVGNVLEEAAVDKYTFMRDAYLQRRRYLIYDGNLPEDTD
GKNPPEGAEQGGSVSPYHRFTPNWPVFRR

Specific function: Unknown

COG id: COG2853

COG function: function code M; Surface lipoprotein

Gene ontology:

Cell location: Attached To The Outer Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaA family [H]

Homologues:

Organism=Escherichia coli, GI1788688, Length=232, Percent_Identity=34.051724137931, Blast_Score=113, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007428 [H]

Pfam domain/function: PF04333 VacJ [H]

EC number: NA

Molecular weight: Translated: 28988; Mature: 28988

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTTTSNRTLRGLALGMAASAVLLAGCATGPNANPADPIEPFNREVFRINDDLDKGVLKP
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHH
VAQTYVDVVPSPARTAVSNFFSNAGDVYSAVNNLLQLKGTAALEDTMRVAINTVLGLGGL
HHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH
IDIASDAGLPKHKEDFGQTLGVWGVPAGAYIVWPLLGPSTVRDTAGFLVDWQLDPLTYFN
HHHHCCCCCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHCCCEEEEEEECCEEEEC
NSAVTYSLAALRVVDARAGLLGVGNVLEEAAVDKYTFMRDAYLQRRRYLIYDGNLPEDTD
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
GKNPPEGAEQGGSVSPYHRFTPNWPVFRR
CCCCCCHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTTTSNRTLRGLALGMAASAVLLAGCATGPNANPADPIEPFNREVFRINDDLDKGVLKP
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHH
VAQTYVDVVPSPARTAVSNFFSNAGDVYSAVNNLLQLKGTAALEDTMRVAINTVLGLGGL
HHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH
IDIASDAGLPKHKEDFGQTLGVWGVPAGAYIVWPLLGPSTVRDTAGFLVDWQLDPLTYFN
HHHHCCCCCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHCCCEEEEEEECCEEEEC
NSAVTYSLAALRVVDARAGLLGVGNVLEEAAVDKYTFMRDAYLQRRRYLIYDGNLPEDTD
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
GKNPPEGAEQGGSVSPYHRFTPNWPVFRR
CCCCCCHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA