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The map label for this gene is yrbD [C]

Identifier: 17547679

GI number: 17547679

Start: 3188129

End: 3188650

Strand: Reverse

Name: yrbD [C]

Synonym: RSc2960

Alternate gene names: 17547679

Gene position: 3188650-3188129 (Counterclockwise)

Preceding gene: 17547680

Following gene: 17547678

Centisome position: 85.8

GC content: 64.56

Gene sequence:

>522_bases
ATGCGTAAGAGCCTCCTCGATTTCTGGGTCGGACTGTTCGTGCTGGTGGGCCTCATCGCGCTGCTGTTCCTGGCGCTGAA
GGCGGGCAACATGAGCGCGTTCTCGTTTGCCAAGACCTACCAGGTGCGCGCGGCGTTCGACAACATCGGCGGATTGAAGG
TGCGCGCGCCGGTCAAGAGCGCGGGCGTGGTGGTGGGGCGCGTGTCGCAGATCCTGTTCGACGACAAGTCGTACCAGGCC
ACCGTCGTGCTCGACATGGACCAGCGCTACCAGTTTCCCAAGGATTCCTCGGCCAAGATCCTGACCTCGGGGCTGCTCGG
CGAACAGTACGTCGGCCTGGAGCCGGGCGGTGATTCGGCCATGCTGGCCGGCGGCAGCAAGATCACGATGACGCAGTCGG
CCGTGGTGCTGGAGAACCTGATCAGCCAGTTCCTTTATAGCAAGGCGGCGGACGCCGGCGCGGGCAATGCCGGCGGTGGT
GCCGGCAAGCCGGCCGAGAGCAGTGGGAGTGGGAGTAAATAA

Upstream 100 bases:

>100_bases
CGCACCGTGGTGATTGCGTCGCTGGCCGTGCTGGCGTTGGACTTCGTGCTGACCGCGCTGATGTTCAGTTGAAGCGGTCG
GCATTCAGAGAGAAAAGATC

Downstream 100 bases:

>100_bases
ATCATGAGAACAACAACATCGAATCGGACCCTGCGCGGCCTTGCGCTGGGCATGGCGGCAAGCGCCGTCCTGCTCGCGGG
CTGCGCCACCGGGCCCAACG

Product: signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MRKSLLDFWVGLFVLVGLIALLFLALKAGNMSAFSFAKTYQVRAAFDNIGGLKVRAPVKSAGVVVGRVSQILFDDKSYQA
TVVLDMDQRYQFPKDSSAKILTSGLLGEQYVGLEPGGDSAMLAGGSKITMTQSAVVLENLISQFLYSKAADAGAGNAGGG
AGKPAESSGSGSK

Sequences:

>Translated_173_residues
MRKSLLDFWVGLFVLVGLIALLFLALKAGNMSAFSFAKTYQVRAAFDNIGGLKVRAPVKSAGVVVGRVSQILFDDKSYQA
TVVLDMDQRYQFPKDSSAKILTSGLLGEQYVGLEPGGDSAMLAGGSKITMTQSAVVLENLISQFLYSKAADAGAGNAGGG
AGKPAESSGSGSK
>Mature_173_residues
MRKSLLDFWVGLFVLVGLIALLFLALKAGNMSAFSFAKTYQVRAAFDNIGGLKVRAPVKSAGVVVGRVSQILFDDKSYQA
TVVLDMDQRYQFPKDSSAKILTSGLLGEQYVGLEPGGDSAMLAGGSKITMTQSAVVLENLISQFLYSKAADAGAGNAGGG
AGKPAESSGSGSK

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=176, Percent_Identity=44.3181818181818, Blast_Score=134, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 17992; Mature: 17992

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSLLDFWVGLFVLVGLIALLFLALKAGNMSAFSFAKTYQVRAAFDNIGGLKVRAPVKS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
AGVVVGRVSQILFDDKSYQATVVLDMDQRYQFPKDSSAKILTSGLLGEQYVGLEPGGDSA
CCCHHHHHHHHHCCCCCCEEEEEEECHHCCCCCCCCCCHHHHHCCCCCCEECCCCCCCCE
MLAGGSKITMTQSAVVLENLISQFLYSKAADAGAGNAGGGAGKPAESSGSGSK
EEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRKSLLDFWVGLFVLVGLIALLFLALKAGNMSAFSFAKTYQVRAAFDNIGGLKVRAPVKS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
AGVVVGRVSQILFDDKSYQATVVLDMDQRYQFPKDSSAKILTSGLLGEQYVGLEPGGDSA
CCCHHHHHHHHHCCCCCCEEEEEEECHHCCCCCCCCCCHHHHHCCCCCCEECCCCCCCCE
MLAGGSKITMTQSAVVLENLISQFLYSKAADAGAGNAGGGAGKPAESSGSGSK
EEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]