Click here to switch to the map view.

The map label for this gene is ygiF [H]

Identifier: 17547605

GI number: 17547605

Start: 3113378

End: 3114049

Strand: Direct

Name: ygiF [H]

Synonym: RSc2886

Alternate gene names: 17547605

Gene position: 3113378-3114049 (Clockwise)

Preceding gene: 17547604

Following gene: 17547606

Centisome position: 83.77

GC content: 73.81

Gene sequence:

>672_bases
ATGGCCCGCGAGATCGAACTGAAGCTGGCGGTGCCCGCCGGCGCGCACGACGCGCTGGCCGGCTGGCTGGACGCGCATGC
GCAGCCGGCCGGCTCCGTGGCGCTGGCCAACGTGTACTACGACACGCCCGAGCAGGCACTTGCGCGCAACCGCGCGGCCC
TGCGCGTGCGCCGCCACGGCAACCAGTGGCTGCAGACGCTGAAGACGGCCGGCGACGGCGGCCAGGGTGGGCACGCCGGC
CTGTCGGCCCGCCACGAATGGGAAGTGCCGCTGGACGGCGATGCGCTGTCGGTCGAGGCCTTCGCCGCGCGGGATGCCGC
CGAGGCGGCCGACTTCGTCCGCCCGCATGCCGACCGCCTGGTGCCGCTGTTCCGCACCGATTTCACGCGCCGGCTGTGGC
ACACCGCGGCGGACGGCGGCGAGATCGAGATCGCGCTGGATGCCGGCGCCATCCTCGTGCCCGGCACCGACGCGCACGAA
GCGATCGACGAACTGGAAGTGGAATGGAAGCCGGCCGCCGGCAACACCCTGGACGAATCGGCGATCGCCGAGCGTCTGCA
CGCGTGGACGCAAACCCTGCGCACGGCCGTGCCGGGCCTCGCGCCGCTCGACGCCAGCAAGGCCCTGCGCGGCTACCGGC
TGCATGCGACGGCGACCGGAGCCCTGGCATGA

Upstream 100 bases:

>100_bases
AAGATGCGCGCGGCCGACGTCAACGCCTTCCTGGTCGGCGAAGCCTTCATGCGTGCCGACGATCCGGGCACCGAGCTGGC
GCGCCTGTTCGCCTGACGCG

Downstream 100 bases:

>100_bases
CGCGCCGCGCTGACCCGGCCCAGGCCACGCTCTTCGACGATGACGAACCCGCCGGTGCGCCGACGGCCACGGGTGGCTTC
GTTCCGCTGGCCGACCAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: ORFXE [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MAREIELKLAVPAGAHDALAGWLDAHAQPAGSVALANVYYDTPEQALARNRAALRVRRHGNQWLQTLKTAGDGGQGGHAG
LSARHEWEVPLDGDALSVEAFAARDAAEAADFVRPHADRLVPLFRTDFTRRLWHTAADGGEIEIALDAGAILVPGTDAHE
AIDELEVEWKPAAGNTLDESAIAERLHAWTQTLRTAVPGLAPLDASKALRGYRLHATATGALA

Sequences:

>Translated_223_residues
MAREIELKLAVPAGAHDALAGWLDAHAQPAGSVALANVYYDTPEQALARNRAALRVRRHGNQWLQTLKTAGDGGQGGHAG
LSARHEWEVPLDGDALSVEAFAARDAAEAADFVRPHADRLVPLFRTDFTRRLWHTAADGGEIEIALDAGAILVPGTDAHE
AIDELEVEWKPAAGNTLDESAIAERLHAWTQTLRTAVPGLAPLDASKALRGYRLHATATGALA
>Mature_222_residues
AREIELKLAVPAGAHDALAGWLDAHAQPAGSVALANVYYDTPEQALARNRAALRVRRHGNQWLQTLKTAGDGGQGGHAGL
SARHEWEVPLDGDALSVEAFAARDAAEAADFVRPHADRLVPLFRTDFTRRLWHTAADGGEIEIALDAGAILVPGTDAHEA
IDELEVEWKPAAGNTLDESAIAERLHAWTQTLRTAVPGLAPLDASKALRGYRLHATATGALA

Specific function: Unknown

COG id: COG3025

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1598 [H]

Homologues:

Organism=Escherichia coli, GI1789434, Length=225, Percent_Identity=36, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008172
- InterPro:   IPR004206 [H]

Pfam domain/function: PF01928 CYTH [H]

EC number: NA

Molecular weight: Translated: 23745; Mature: 23613

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAREIELKLAVPAGAHDALAGWLDAHAQPAGSVALANVYYDTPEQALARNRAALRVRRHG
CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
NQWLQTLKTAGDGGQGGHAGLSARHEWEVPLDGDALSVEAFAARDAAEAADFVRPHADRL
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHH
VPLFRTDFTRRLWHTAADGGEIEIALDAGAILVPGTDAHEAIDELEVEWKPAAGNTLDES
HHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEECCCCHHHHHHHHCEEEECCCCCCCCHH
AIAERLHAWTQTLRTAVPGLAPLDASKALRGYRLHATATGALA
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCEEEEEECCCCCC
>Mature Secondary Structure 
AREIELKLAVPAGAHDALAGWLDAHAQPAGSVALANVYYDTPEQALARNRAALRVRRHG
CCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
NQWLQTLKTAGDGGQGGHAGLSARHEWEVPLDGDALSVEAFAARDAAEAADFVRPHADRL
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCHHHHH
VPLFRTDFTRRLWHTAADGGEIEIALDAGAILVPGTDAHEAIDELEVEWKPAAGNTLDES
HHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEECCCCHHHHHHHHCEEEECCCCCCCCHH
AIAERLHAWTQTLRTAVPGLAPLDASKALRGYRLHATATGALA
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8412694; 9278503 [H]