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The map label for this gene is 17547459

Identifier: 17547459

GI number: 17547459

Start: 2949826

End: 2950248

Strand: Reverse

Name: 17547459

Synonym: RSc2740

Alternate gene names: NA

Gene position: 2950248-2949826 (Counterclockwise)

Preceding gene: 17547460

Following gene: 17547458

Centisome position: 79.38

GC content: 64.3

Gene sequence:

>423_bases
ATGCTCTGGGTCAAGGCCTTTCACATCGTCTTCGTTGCGTCGTGGTTCGCCGGCCTGTTCTATCTGCCGCGCATCTTCGT
CAACCTGGCGATGGAAACCCAGCCCGCGGCCGTCACGCGCCTGCTGCTGATGGCGCGCAAGCTGTTCCGCTTCACGACCC
TGCTGGCGATCGTCGCGATCGTGCTGGGGCTGTGGCTGTTCCTCGGCTACCGCATCGGCCTGGTCCCGCCGAACGGCTGG
ATGCATGCCAAGCTGGCGCTGGTGCTGGTGGCCATCGGCTACCACCATGGCTGCGGCGTGCTGCTGCGCAAATTCGAGGC
GGGCGCCAACAAGCGCTCGCACACGTTCTACCGCTGGTTCAACGAACTGCCGGTGCTGCTGTTGCTGGCGATCACGATCC
TGGTCGTGGTCAAGCCGTTCTGA

Upstream 100 bases:

>100_bases
GTGTTCGGGCACGGCGAGATCCGCACCTGATACCGTCGCGCACGCTGCGCGGGCAGCGTGCGCCATGTCCACAACGCTTT
CTCCTCACAAGGATCGCCGC

Downstream 100 bases:

>100_bases
TCTTCTGTTTCTGTTTGTCCGATGCCGATCGCTTACTTCGCACCGTGCCCCCGGGGGCTGGAACAGGCGCTGGCCGATGA
GCTGGCCGAAATCGCCATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MLWVKAFHIVFVASWFAGLFYLPRIFVNLAMETQPAAVTRLLLMARKLFRFTTLLAIVAIVLGLWLFLGYRIGLVPPNGW
MHAKLALVLVAIGYHHGCGVLLRKFEAGANKRSHTFYRWFNELPVLLLLAITILVVVKPF

Sequences:

>Translated_140_residues
MLWVKAFHIVFVASWFAGLFYLPRIFVNLAMETQPAAVTRLLLMARKLFRFTTLLAIVAIVLGLWLFLGYRIGLVPPNGW
MHAKLALVLVAIGYHHGCGVLLRKFEAGANKRSHTFYRWFNELPVLLLLAITILVVVKPF
>Mature_140_residues
MLWVKAFHIVFVASWFAGLFYLPRIFVNLAMETQPAAVTRLLLMARKLFRFTTLLAIVAIVLGLWLFLGYRIGLVPPNGW
MHAKLALVLVAIGYHHGCGVLLRKFEAGANKRSHTFYRWFNELPVLLLLAITILVVVKPF

Specific function: Unknown

COG id: COG1981

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0093 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014351
- InterPro:   IPR008457
- InterPro:   IPR005265 [H]

Pfam domain/function: PF05425 CopD; PF03653 UPF0093 [H]

EC number: NA

Molecular weight: Translated: 15950; Mature: 15950

Theoretical pI: Translated: 11.35; Mature: 11.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWVKAFHIVFVASWFAGLFYLPRIFVNLAMETQPAAVTRLLLMARKLFRFTTLLAIVAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLGLWLFLGYRIGLVPPNGWMHAKLALVLVAIGYHHGCGVLLRKFEAGANKRSHTFYRWF
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHH
NELPVLLLLAITILVVVKPF
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLWVKAFHIVFVASWFAGLFYLPRIFVNLAMETQPAAVTRLLLMARKLFRFTTLLAIVAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLGLWLFLGYRIGLVPPNGWMHAKLALVLVAIGYHHGCGVLLRKFEAGANKRSHTFYRWF
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHH
NELPVLLLLAITILVVVKPF
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]