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The map label for this gene is ycbY [C]

Identifier: 17547458

GI number: 17547458

Start: 2948389

End: 2949804

Strand: Reverse

Name: ycbY [C]

Synonym: RSc2739

Alternate gene names: 17547458

Gene position: 2949804-2948389 (Counterclockwise)

Preceding gene: 17547459

Following gene: 17547448

Centisome position: 79.37

GC content: 71.4

Gene sequence:

>1416_bases
ATGCCGATCGCTTACTTCGCACCGTGCCCCCGGGGGCTGGAACAGGCGCTGGCCGATGAGCTGGCCGAAATCGCCATCCG
CCCCGAGGTGGACGAGCTGGCCGCGTTCGAGGTCGGCCGTACCGTGCCGGGCGGCGTGCACTTCTTCGGCACGCAGGGCG
CGGCCTACGCCGTCAACCTGCACAGCCGCATTGCCAGCCGGGTGCTGATGCGCCTCGGCGCGCGCGGCTACCGCTCGGAA
GACGACATCTACAGCCTGACCGCCGCGCAGCGCTGGGAAGACCATTTCTCGCCCGACGAGACCATCCGGGTGGACGTGAC
GGCGCACAAGTCACCGCTGCAGAGCCTGAATTTCGTTGCGCTGCGCGTGAAGGACGGCATCTGCGACCGCTTCCGCCAGC
GTGCCGGCGCGCGTCCCAGCGTGGACACCGTCTCGCCCGACGTGCGCATCTACGCCTACCTGAGCGAGACCGACTGCACG
CTCTATCTCGACACCACCGGCGAGCCGCTGTTCAAGCGCGGCTGGCGCCAGGAGAAGGGCGAGGCGCCGCTCAAGGAGAA
CCTGGCTGCCGGCATCCTGCGCCTGACCGGCTGGACGGGTGCCCAGGGCCAACCGTTCTACGACCCGATGTGCGGCAGCG
GCACCTTCCTGGTGGAAGCCGCGCAGCGCGCGCTGGGCGTTGCGCCGGGTGGCCAGCGCGCCTTCGCTTGCGAATGGATG
CGCGACCACGACGCCAAGCGCTTCAAGCGCCTGCGCGAAGCCGCGGCCGATGCCGCCGGCGCGGCCATGCGCCATCGCCC
ACCGCTGATCGCGGGGGCCGACATCTCCACCGACATGCTGGCCTATGCGGCCGCCAACTGGCGCCGCGCGGGGCTGCCGG
GCGAGCCGGTGCTCAAGCAGGTCGATGCGCGCTTCGGCAAGCCGCCGTTCGAGGCGCCGGGCGTGCTGCTGATGAATCCG
CCGTATGGTGAGCGGATCGTGGTGCGCGGTGCGCACGGCTCGCGCCGCCGCGGTCCGGAAGGCGAGACCGGGGATCAGGA
CGGCACCGTCTTCGAGCGGGCCAGCCGGGCGATGGGGGCCGGGCGTGATGACCCGCGCCGTCCGTCGCGCGAGCTGCGCC
AGCCGGAGCCCGCGCCGGTCATCGATCCGCGCGAGGAAGCCGCGGCCAACGAGTTCGCGCAGGCTTTCGCCGGTACGCTC
AAGCGCGAGTTTGCCGGCTGGCAGGCGTTCGTCTTCACCGGCGACCTGTCGATGCCGCGCCGGATGCGGCTCAAGGAGTC
GCAGCGCACGCCGCTGTACAACGGCAACATCGAATGCCGGCTGTTCCGGTTCGAGATGGTCAAGGGCGGTATGCGCGACC
GTCCGGCGGGCGAGTCCGCCCCGTCGCCCGACAGCGGCAGCGCCGACGCATCCTGA

Upstream 100 bases:

>100_bases
GTTCTACCGCTGGTTCAACGAACTGCCGGTGCTGCTGTTGCTGGCGATCACGATCCTGGTCGTGGTCAAGCCGTTCTGAT
CTTCTGTTTCTGTTTGTCCG

Downstream 100 bases:

>100_bases
GCGCCGGCGCCGCGGGGTGGCCGGTCAGGCGGCCTGCTGCTGCTCCTGGAAGTGCTCCATCCAGGCGGCGAGCTGGGCGG
GGGTGAGCTGGGACTGGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MPIAYFAPCPRGLEQALADELAEIAIRPEVDELAAFEVGRTVPGGVHFFGTQGAAYAVNLHSRIASRVLMRLGARGYRSE
DDIYSLTAAQRWEDHFSPDETIRVDVTAHKSPLQSLNFVALRVKDGICDRFRQRAGARPSVDTVSPDVRIYAYLSETDCT
LYLDTTGEPLFKRGWRQEKGEAPLKENLAAGILRLTGWTGAQGQPFYDPMCGSGTFLVEAAQRALGVAPGGQRAFACEWM
RDHDAKRFKRLREAAADAAGAAMRHRPPLIAGADISTDMLAYAAANWRRAGLPGEPVLKQVDARFGKPPFEAPGVLLMNP
PYGERIVVRGAHGSRRRGPEGETGDQDGTVFERASRAMGAGRDDPRRPSRELRQPEPAPVIDPREEAAANEFAQAFAGTL
KREFAGWQAFVFTGDLSMPRRMRLKESQRTPLYNGNIECRLFRFEMVKGGMRDRPAGESAPSPDSGSADAS

Sequences:

>Translated_471_residues
MPIAYFAPCPRGLEQALADELAEIAIRPEVDELAAFEVGRTVPGGVHFFGTQGAAYAVNLHSRIASRVLMRLGARGYRSE
DDIYSLTAAQRWEDHFSPDETIRVDVTAHKSPLQSLNFVALRVKDGICDRFRQRAGARPSVDTVSPDVRIYAYLSETDCT
LYLDTTGEPLFKRGWRQEKGEAPLKENLAAGILRLTGWTGAQGQPFYDPMCGSGTFLVEAAQRALGVAPGGQRAFACEWM
RDHDAKRFKRLREAAADAAGAAMRHRPPLIAGADISTDMLAYAAANWRRAGLPGEPVLKQVDARFGKPPFEAPGVLLMNP
PYGERIVVRGAHGSRRRGPEGETGDQDGTVFERASRAMGAGRDDPRRPSRELRQPEPAPVIDPREEAAANEFAQAFAGTL
KREFAGWQAFVFTGDLSMPRRMRLKESQRTPLYNGNIECRLFRFEMVKGGMRDRPAGESAPSPDSGSADAS
>Mature_470_residues
PIAYFAPCPRGLEQALADELAEIAIRPEVDELAAFEVGRTVPGGVHFFGTQGAAYAVNLHSRIASRVLMRLGARGYRSED
DIYSLTAAQRWEDHFSPDETIRVDVTAHKSPLQSLNFVALRVKDGICDRFRQRAGARPSVDTVSPDVRIYAYLSETDCTL
YLDTTGEPLFKRGWRQEKGEAPLKENLAAGILRLTGWTGAQGQPFYDPMCGSGTFLVEAAQRALGVAPGGQRAFACEWMR
DHDAKRFKRLREAAADAAGAAMRHRPPLIAGADISTDMLAYAAANWRRAGLPGEPVLKQVDARFGKPPFEAPGVLLMNPP
YGERIVVRGAHGSRRRGPEGETGDQDGTVFERASRAMGAGRDDPRRPSRELRQPEPAPVIDPREEAAANEFAQAFAGTLK
REFAGWQAFVFTGDLSMPRRMRLKESQRTPLYNGNIECRLFRFEMVKGGMRDRPAGESAPSPDSGSADAS

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=291, Percent_Identity=35.0515463917526, Blast_Score=161, Evalue=8e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 51706; Mature: 51575

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIAYFAPCPRGLEQALADELAEIAIRPEVDELAAFEVGRTVPGGVHFFGTQGAAYAVNL
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCCEEEEEH
HSRIASRVLMRLGARGYRSEDDIYSLTAAQRWEDHFSPDETIRVDVTAHKSPLQSLNFVA
HHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEE
LRVKDGICDRFRQRAGARPSVDTVSPDVRIYAYLSETDCTLYLDTTGEPLFKRGWRQEKG
EEECHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHCCCCCCC
EAPLKENLAAGILRLTGWTGAQGQPFYDPMCGSGTFLVEAAQRALGVAPGGQRAFACEWM
CCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEHHH
RDHDAKRFKRLREAAADAAGAAMRHRPPLIAGADISTDMLAYAAANWRRAGLPGEPVLKQ
HHCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHH
VDARFGKPPFEAPGVLLMNPPYGERIVVRGAHGSRRRGPEGETGDQDGTVFERASRAMGA
HHHHHCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
GRDDPRRPSRELRQPEPAPVIDPREEAAANEFAQAFAGTLKREFAGWQAFVFTGDLSMPR
CCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
RMRLKESQRTPLYNGNIECRLFRFEMVKGGMRDRPAGESAPSPDSGSADAS
HHHHHHHCCCCCCCCCEEEEEEEEEHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PIAYFAPCPRGLEQALADELAEIAIRPEVDELAAFEVGRTVPGGVHFFGTQGAAYAVNL
CCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCCEEEEEH
HSRIASRVLMRLGARGYRSEDDIYSLTAAQRWEDHFSPDETIRVDVTAHKSPLQSLNFVA
HHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEE
LRVKDGICDRFRQRAGARPSVDTVSPDVRIYAYLSETDCTLYLDTTGEPLFKRGWRQEKG
EEECHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHCCCCCCC
EAPLKENLAAGILRLTGWTGAQGQPFYDPMCGSGTFLVEAAQRALGVAPGGQRAFACEWM
CCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEHHH
RDHDAKRFKRLREAAADAAGAAMRHRPPLIAGADISTDMLAYAAANWRRAGLPGEPVLKQ
HHCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHH
VDARFGKPPFEAPGVLLMNPPYGERIVVRGAHGSRRRGPEGETGDQDGTVFERASRAMGA
HHHHHCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
GRDDPRRPSRELRQPEPAPVIDPREEAAANEFAQAFAGTLKREFAGWQAFVFTGDLSMPR
CCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
RMRLKESQRTPLYNGNIECRLFRFEMVKGGMRDRPAGESAPSPDSGSADAS
HHHHHHHCCCCCCCCCEEEEEEEEEHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]