| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is hemH [H]
Identifier: 17547362
GI number: 17547362
Start: 2842956
End: 2844071
Strand: Reverse
Name: hemH [H]
Synonym: RSc2643
Alternate gene names: 17547362
Gene position: 2844071-2842956 (Counterclockwise)
Preceding gene: 17547363
Following gene: 17547361
Centisome position: 76.53
GC content: 69.35
Gene sequence:
>1116_bases ATGCCCTTTTTGCCCGAACCCCTGTTCCAGCACGGCCAGCCCGATCGCACCGCGATCCTGCTGGTCAACCTCGGCACGCC CGACGGCACCTCGCCGCGCGAGGTCGGCCGCTACCTGCGCCAGTTCCTGTCCGACCCGCGCGTGGTGGAGATTCCGCGGG CGGCGTGGTGGTTCATCCTCAACGTGCTGATCCTGCCGCTGCGCTCGCGCGCCTCGGCGCACAAGTACGAGACGGTCTGG CTGCGCGAGGCCAACATGACGGGCTCGCCGCTGCTGGTCTACAGCGAGCGCCAGGCGCACGCCTTGCAGCAACTGCTCGA TGCGCAGGGGCACGACGTGGTGGTGGCCTGCGCGATGCGCTACGGCAACCCGTCGATCCCCTCGGTGATGCAGACACTGC GCAAGCAGGGCGTGGAGCGCATCCTGGTGCTGCCGATGTATCCGCAGTATTCCGGCACCACCACCGCCACCGCGTTCGAC GAGGTCTTCCGCGTGATGGGCCAGATGCGCAACCAGCCGGAGCTGCGGCTGGTCAAGCATTTCCACGATCATCCGGCCTA CATCAACGCGCTGCACCAGCAGGTGGGCGCGTACTGGGCGCAGCACGGCGCGCCGGATTTCGCGCGCGGCGACAAGCTGC TGCTGTCGTTCCACGGCGTGCCGCGCCGCACGCTCGAGCTTGGCGATCCGTACCACTGCGCGTGCCTGAAGACCGGCCGC CTGCTCGGCGAGGCGCTTGGCCTGCAGCCGGGCCAGTACCTGGTGACGTTCCAGTCGCGCTTTGGCCGCGCCGAGTGGCT GCAGCCGTATACCGCGCCCACGCTCGAAGAGCTCGGTCGCGTCGGCACCGGCCGCGTCGACGTGTTCTGCCCGGGCTTTC CGGCCGACTGCCTGGAGACGCTGGAGGAGATCGCCATGGAAGGGCAGTCCACCTTCCGTGTCGCCGGCGGCAAGGACTTC CACTACATCCCGTGCCTGAACGACAGCGAGCCCTGGATTGCCGGCCTGGCCGATATCGCGCAGGCGCACCTGCAGGGCTG GCCGCTCGCGCTGCCGCATCCGCATGTGCTGGAAGCCAGCCGCACGCGCGCGCAGAGCAAGGGGGCCGCGGCATGA
Upstream 100 bases:
>100_bases CCCTGCGCCGGCGTGGTCAAGGACGGCGCGCCGGCACGCTGAGCGCGGCCTGGCGGACCGGCTCGTATAATCGACCGGAT CATCCGCAAAGCCGCGCCCC
Downstream 100 bases:
>100_bases AGGTGAGCACCGACGCGGATGGCCGCGTGCGCATCGACAAATGGCTGTGGGCGGCGCGCTTCTTCAAGACACGCTCGCAG GCGACCGATGCGGTGGAGCG
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase [H]
Number of amino acids: Translated: 371; Mature: 370
Protein sequence:
>371_residues MPFLPEPLFQHGQPDRTAILLVNLGTPDGTSPREVGRYLRQFLSDPRVVEIPRAAWWFILNVLILPLRSRASAHKYETVW LREANMTGSPLLVYSERQAHALQQLLDAQGHDVVVACAMRYGNPSIPSVMQTLRKQGVERILVLPMYPQYSGTTTATAFD EVFRVMGQMRNQPELRLVKHFHDHPAYINALHQQVGAYWAQHGAPDFARGDKLLLSFHGVPRRTLELGDPYHCACLKTGR LLGEALGLQPGQYLVTFQSRFGRAEWLQPYTAPTLEELGRVGTGRVDVFCPGFPADCLETLEEIAMEGQSTFRVAGGKDF HYIPCLNDSEPWIAGLADIAQAHLQGWPLALPHPHVLEASRTRAQSKGAAA
Sequences:
>Translated_371_residues MPFLPEPLFQHGQPDRTAILLVNLGTPDGTSPREVGRYLRQFLSDPRVVEIPRAAWWFILNVLILPLRSRASAHKYETVW LREANMTGSPLLVYSERQAHALQQLLDAQGHDVVVACAMRYGNPSIPSVMQTLRKQGVERILVLPMYPQYSGTTTATAFD EVFRVMGQMRNQPELRLVKHFHDHPAYINALHQQVGAYWAQHGAPDFARGDKLLLSFHGVPRRTLELGDPYHCACLKTGR LLGEALGLQPGQYLVTFQSRFGRAEWLQPYTAPTLEELGRVGTGRVDVFCPGFPADCLETLEEIAMEGQSTFRVAGGKDF HYIPCLNDSEPWIAGLADIAQAHLQGWPLALPHPHVLEASRTRAQSKGAAA >Mature_370_residues PFLPEPLFQHGQPDRTAILLVNLGTPDGTSPREVGRYLRQFLSDPRVVEIPRAAWWFILNVLILPLRSRASAHKYETVWL REANMTGSPLLVYSERQAHALQQLLDAQGHDVVVACAMRYGNPSIPSVMQTLRKQGVERILVLPMYPQYSGTTTATAFDE VFRVMGQMRNQPELRLVKHFHDHPAYINALHQQVGAYWAQHGAPDFARGDKLLLSFHGVPRRTLELGDPYHCACLKTGRL LGEALGLQPGQYLVTFQSRFGRAEWLQPYTAPTLEELGRVGTGRVDVFCPGFPADCLETLEEIAMEGQSTFRVAGGKDFH YIPCLNDSEPWIAGLADIAQAHLQGWPLALPHPHVLEASRTRAQSKGAAA
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499021, Length=265, Percent_Identity=23.7735849056604, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI60499025, Length=265, Percent_Identity=23.7735849056604, Blast_Score=87, Evalue=2e-17, Organism=Escherichia coli, GI1786681, Length=328, Percent_Identity=46.6463414634146, Blast_Score=280, Evalue=1e-76, Organism=Saccharomyces cerevisiae, GI6324750, Length=342, Percent_Identity=25.4385964912281, Blast_Score=94, Evalue=5e-20, Organism=Drosophila melanogaster, GI17864156, Length=342, Percent_Identity=23.6842105263158, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24651774, Length=271, Percent_Identity=24.7232472324723, Blast_Score=82, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 - InterPro: IPR019772 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 41412; Mature: 41281
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFLPEPLFQHGQPDRTAILLVNLGTPDGTSPREVGRYLRQFLSDPRVVEIPRAAWWFIL CCCCCCHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHH NVLILPLRSRASAHKYETVWLREANMTGSPLLVYSERQAHALQQLLDAQGHDVVVACAMR HHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCHHHHHHHHHHCCCCCCEEEEEEEC YGNPSIPSVMQTLRKQGVERILVLPMYPQYSGTTTATAFDEVFRVMGQMRNQPELRLVKH CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH FHDHPAYINALHQQVGAYWAQHGAPDFARGDKLLLSFHGVPRRTLELGDPYHCACLKTGR HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHH LLGEALGLQPGQYLVTFQSRFGRAEWLQPYTAPTLEELGRVGTGRVDVFCPGFPADCLET HHHHHHCCCCCCEEEEEHHHCCCHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCHHHHHH LEEIAMEGQSTFRVAGGKDFHYIPCLNDSEPWIAGLADIAQAHLQGWPLALPHPHVLEAS HHHHHHCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH RTRAQSKGAAA HHHHCCCCCCC >Mature Secondary Structure PFLPEPLFQHGQPDRTAILLVNLGTPDGTSPREVGRYLRQFLSDPRVVEIPRAAWWFIL CCCCCHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHH NVLILPLRSRASAHKYETVWLREANMTGSPLLVYSERQAHALQQLLDAQGHDVVVACAMR HHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCHHHHHHHHHHCCCCCCEEEEEEEC YGNPSIPSVMQTLRKQGVERILVLPMYPQYSGTTTATAFDEVFRVMGQMRNQPELRLVKH CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH FHDHPAYINALHQQVGAYWAQHGAPDFARGDKLLLSFHGVPRRTLELGDPYHCACLKTGR HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHH LLGEALGLQPGQYLVTFQSRFGRAEWLQPYTAPTLEELGRVGTGRVDVFCPGFPADCLET HHHHHHCCCCCCEEEEEHHHCCCHHHCCCCCCHHHHHHCCCCCCCEEEEECCCCHHHHHH LEEIAMEGQSTFRVAGGKDFHYIPCLNDSEPWIAGLADIAQAHLQGWPLALPHPHVLEAS HHHHHHCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH RTRAQSKGAAA HHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA