| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yohF [C]
Identifier: 17547316
GI number: 17547316
Start: 2801443
End: 2802201
Strand: Reverse
Name: yohF [C]
Synonym: RSc2597
Alternate gene names: 17547316
Gene position: 2802201-2801443 (Counterclockwise)
Preceding gene: 17547318
Following gene: 17547315
Centisome position: 75.4
GC content: 61.79
Gene sequence:
>759_bases ATGACTACCAAAATCGCACTCATTACCGGCGCCAGCCGCGGCTTAGGCCGCAACATGGCGCTTCACCTTGCCAAGCGTGG TGTTCACATCATCGGCACCTACCGCAGCGGGGCCGAGCAGGCGCAGACGCTCAAGCAGGAGATCGAAGCTCTGGGCGGCA AGGCCACGATGCTCGCACTCGACGTCACGGAGACCGCCGGCTATCCGGCGTTCACGAGCGCAGTGACCGATACGCTGAAG AACGACTTCGGCCGCGAACGCTTTGACTTCCTCATCAACAATGCCGGTAACGGCCTCTTCGCGAAGTTCGTGGATGCGAC CGAAGAGCAGTTCGCGTCGCTGATTGCCACTCACCTGCGTGGCCCGATCTTTCTGACCCAGAAGCTGTTGCCGCTGTTGG AAAATGGCGGCCGTATCCTGAACGTGTCTTCGGGTTTCGTGCGCTTTACCATGCCGGGCTACAGCGTCTATGCCGCAGTG AAGGCTGCGCTCGAAGTTCTCACGCGCTACATGGCCGTTGAACTTGGCTCGCGCCAGATCCGGGTGAATGCCATCGCTCC TGGCGCGATCGCGACAGACTTCGGCGGCGGCGCGGTGCGCGACAACAAGGACGTCAACGCCTACGTTGCTCAGGGCATAG CCCTGGGTCGTGTGGGACTGCCTGACGACATTGGCGGTGCCGTAGCGGCCATCTTGTCGGATGACATGGGCTGGGCGAAC GGCACGACCTTCGACATCTCCGGAGGGCAGTTGCTGTAG
Upstream 100 bases:
>100_bases GGATGGGCTGCAATTCGGCCGCTCCCTTATCGTTACCGCACCGATGCGAAGACTCAAGGCCTTCGCGCTTCCTGACCCTT TCGTTCCCAAAGGCAACGTC
Downstream 100 bases:
>100_bases TCGACAGCCCAGCAGCTTCAAGCAGTCAACCAGCACCCCGCCGACACCCGGCCAATGTAAGAGGACCCACATCATGACCG ACCCATCCAAGAGCGCTCTG
Product: dehydrogenase/reductase oxidoreductase
Products: NA
Alternate protein names: ORFC [H]
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MTTKIALITGASRGLGRNMALHLAKRGVHIIGTYRSGAEQAQTLKQEIEALGGKATMLALDVTETAGYPAFTSAVTDTLK NDFGRERFDFLINNAGNGLFAKFVDATEEQFASLIATHLRGPIFLTQKLLPLLENGGRILNVSSGFVRFTMPGYSVYAAV KAALEVLTRYMAVELGSRQIRVNAIAPGAIATDFGGGAVRDNKDVNAYVAQGIALGRVGLPDDIGGAVAAILSDDMGWAN GTTFDISGGQLL
Sequences:
>Translated_252_residues MTTKIALITGASRGLGRNMALHLAKRGVHIIGTYRSGAEQAQTLKQEIEALGGKATMLALDVTETAGYPAFTSAVTDTLK NDFGRERFDFLINNAGNGLFAKFVDATEEQFASLIATHLRGPIFLTQKLLPLLENGGRILNVSSGFVRFTMPGYSVYAAV KAALEVLTRYMAVELGSRQIRVNAIAPGAIATDFGGGAVRDNKDVNAYVAQGIALGRVGLPDDIGGAVAAILSDDMGWAN GTTFDISGGQLL >Mature_251_residues TTKIALITGASRGLGRNMALHLAKRGVHIIGTYRSGAEQAQTLKQEIEALGGKATMLALDVTETAGYPAFTSAVTDTLKN DFGRERFDFLINNAGNGLFAKFVDATEEQFASLIATHLRGPIFLTQKLLPLLENGGRILNVSSGFVRFTMPGYSVYAAVK AALEVLTRYMAVELGSRQIRVNAIAPGAIATDFGGGAVRDNKDVNAYVAQGIALGRVGLPDDIGGAVAAILSDDMGWANG TTFDISGGQLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=30.1587301587302, Blast_Score=112, Evalue=5e-25, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=28.4, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=29.6747967479675, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=26.5873015873016, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=30.1020408163265, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI4557649, Length=193, Percent_Identity=29.5336787564767, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=29.2553191489362, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=28.4, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI7706318, Length=207, Percent_Identity=28.9855072463768, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI59889578, Length=213, Percent_Identity=28.6384976525822, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI10190704, Length=191, Percent_Identity=29.8429319371728, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI19923817, Length=264, Percent_Identity=22.3484848484848, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI20149619, Length=225, Percent_Identity=28, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1788459, Length=252, Percent_Identity=32.1428571428571, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=34.6456692913386, Blast_Score=107, Evalue=9e-25, Organism=Escherichia coli, GI2367175, Length=257, Percent_Identity=32.6848249027237, Blast_Score=103, Evalue=8e-24, Organism=Escherichia coli, GI1789208, Length=256, Percent_Identity=32.421875, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=32.0610687022901, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=32.258064516129, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789378, Length=256, Percent_Identity=28.125, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=28.2258064516129, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=29.5275590551181, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=27.6, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1786701, Length=194, Percent_Identity=31.4432989690722, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787820, Length=232, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787545, Length=262, Percent_Identity=26.3358778625954, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17560676, Length=256, Percent_Identity=30.078125, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17561402, Length=260, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=29.5275590551181, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=31.3653136531365, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=28.4046692607004, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17559104, Length=243, Percent_Identity=32.9218106995885, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=29.6, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562908, Length=242, Percent_Identity=32.2314049586777, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=28.4584980237154, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=28.2945736434109, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17562906, Length=242, Percent_Identity=32.2314049586777, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17560150, Length=237, Percent_Identity=31.6455696202532, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=29.8507462686567, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17551412, Length=249, Percent_Identity=32.9317269076305, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17538480, Length=248, Percent_Identity=31.4516129032258, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17562990, Length=237, Percent_Identity=31.6455696202532, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193204405, Length=198, Percent_Identity=34.3434343434343, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17561272, Length=212, Percent_Identity=30.6603773584906, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17565030, Length=253, Percent_Identity=32.8063241106719, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562904, Length=242, Percent_Identity=30.1652892561983, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17544670, Length=249, Percent_Identity=29.718875502008, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560332, Length=247, Percent_Identity=29.5546558704453, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560220, Length=198, Percent_Identity=31.8181818181818, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17563726, Length=249, Percent_Identity=30.9236947791165, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17568967, Length=199, Percent_Identity=32.1608040201005, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17531453, Length=198, Percent_Identity=32.8282828282828, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI72000259, Length=233, Percent_Identity=28.3261802575107, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=27.0916334661355, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17558990, Length=219, Percent_Identity=29.2237442922374, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71982365, Length=194, Percent_Identity=28.8659793814433, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71997402, Length=200, Percent_Identity=31.5, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17555706, Length=263, Percent_Identity=25.8555133079848, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=211, Percent_Identity=30.8056872037915, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=30, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=32.4742268041237, Blast_Score=69, Evalue=6e-13, Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=30.0813008130081, Blast_Score=101, Evalue=4e-22, Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=31.640625, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=31.496062992126, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=32.5396825396825, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=29.3650793650794, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=30.2788844621514, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=27.4900398406374, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24651139, Length=198, Percent_Identity=33.8383838383838, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI21358495, Length=202, Percent_Identity=28.2178217821782, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24580925, Length=209, Percent_Identity=30.1435406698565, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI18859837, Length=196, Percent_Identity=32.1428571428571, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24644337, Length=117, Percent_Identity=31.6239316239316, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26568; Mature: 26437
Theoretical pI: Translated: 7.76; Mature: 7.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTKIALITGASRGLGRNMALHLAKRGVHIIGTYRSGAEQAQTLKQEIEALGGKATMLAL CCEEEEEEECCCCCCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE DVTETAGYPAFTSAVTDTLKNDFGRERFDFLINNAGNGLFAKFVDATEEQFASLIATHLR EEHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC GPIFLTQKLLPLLENGGRILNVSSGFVRFTMPGYSVYAAVKAALEVLTRYMAVELGSRQI CCHHHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEE RVNAIAPGAIATDFGGGAVRDNKDVNAYVAQGIALGRVGLPDDIGGAVAAILSDDMGWAN EEEEECCCCEEECCCCCCCCCCCCCHHHHHCCEEECCCCCCCCHHHHHHHHHHCCCCCCC GTTFDISGGQLL CCEEECCCCCCC >Mature Secondary Structure TTKIALITGASRGLGRNMALHLAKRGVHIIGTYRSGAEQAQTLKQEIEALGGKATMLAL CEEEEEEECCCCCCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE DVTETAGYPAFTSAVTDTLKNDFGRERFDFLINNAGNGLFAKFVDATEEQFASLIATHLR EEHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC GPIFLTQKLLPLLENGGRILNVSSGFVRFTMPGYSVYAAVKAALEVLTRYMAVELGSRQI CCHHHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEE RVNAIAPGAIATDFGGGAVRDNKDVNAYVAQGIALGRVGLPDDIGGAVAAILSDDMGWAN EEEEECCCCEEECCCCCCCCCCCCCHHHHHCCEEECCCCCCCCHHHHHHHHHHCCCCCCC GTTFDISGGQLL CCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8868443 [H]