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The map label for this gene is ycdL [C]

Identifier: 17547315

GI number: 17547315

Start: 2800779

End: 2801369

Strand: Reverse

Name: ycdL [C]

Synonym: RSc2596

Alternate gene names: 17547315

Gene position: 2801369-2800779 (Counterclockwise)

Preceding gene: 17547316

Following gene: 17547314

Centisome position: 75.38

GC content: 61.25

Gene sequence:

>591_bases
ATGACCGACCCATCCAAGAGCGCTCTGATTCTCATCGAATACGTCAACGACTGGCTTTCGCCGAGCGGCGGCATCTATCC
GTCGTTCCAGGACCGCGAGCAGGTCGACACCGCGATCGCCAACTCCAAGATCGCGCTCGCCGAAGCCCGCCGTCGCGGTA
TGCACGTGATTCACGCCTCACTGAAGTTCGAGCCCCAGTTCAAGGTGCTTGGCGAAGGCAAATATGGGCTGCGCAAGATG
ATGCGCGACTATCAGTCGTTCCTGGGCGAGCAGGCAGACTTCTTCCCCGGCTTCGAGCCCGCAGACGGCGAGTTCGTAGT
CCGAGAGCGCGGCGGCGGAAGCAGCGTCTTCGTTGGAACCACGCTGGACAGCTATCTGCGCAACAACCGCATCTTCGACA
TCTATCTCGCCGGCTTCTCGCTGCGCCAGTGCGTCGAATCCTCGATGCGCAACGCTCACGACCTCGGCTACAACACCAAC
GTCATCTACGATGCGTCGGCCGGCTACACCCGCAAGCAGCAGGACGACTTCGTGGCGGAGATCGCCCCTTTCTACGCCAA
CGCCATCACCACGCAGGAATTCGTGGCGTAG

Upstream 100 bases:

>100_bases
GACATCTCCGGAGGGCAGTTGCTGTAGTCGACAGCCCAGCAGCTTCAAGCAGTCAACCAGCACCCCGCCGACACCCGGCC
AATGTAAGAGGACCCACATC

Downstream 100 bases:

>100_bases
GCATGAATCGCCTCCCGATCCGGCCCCATGCTGGGGCCGGAAAATGGATCAGTGTGACATTGGAGATGACACGATGATTG
CAATGACGGTCAGCCTCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase Hydrolase/Endoribonuclease L-PSP; Hydrolase; Pyrimidine Utilization Protein B

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MTDPSKSALILIEYVNDWLSPSGGIYPSFQDREQVDTAIANSKIALAEARRRGMHVIHASLKFEPQFKVLGEGKYGLRKM
MRDYQSFLGEQADFFPGFEPADGEFVVRERGGGSSVFVGTTLDSYLRNNRIFDIYLAGFSLRQCVESSMRNAHDLGYNTN
VIYDASAGYTRKQQDDFVAEIAPFYANAITTQEFVA

Sequences:

>Translated_196_residues
MTDPSKSALILIEYVNDWLSPSGGIYPSFQDREQVDTAIANSKIALAEARRRGMHVIHASLKFEPQFKVLGEGKYGLRKM
MRDYQSFLGEQADFFPGFEPADGEFVVRERGGGSSVFVGTTLDSYLRNNRIFDIYLAGFSLRQCVESSMRNAHDLGYNTN
VIYDASAGYTRKQQDDFVAEIAPFYANAITTQEFVA
>Mature_195_residues
TDPSKSALILIEYVNDWLSPSGGIYPSFQDREQVDTAIANSKIALAEARRRGMHVIHASLKFEPQFKVLGEGKYGLRKMM
RDYQSFLGEQADFFPGFEPADGEFVVRERGGGSSVFVGTTLDSYLRNNRIFDIYLAGFSLRQCVESSMRNAHDLGYNTNV
IYDASAGYTRKQQDDFVAEIAPFYANAITTQEFVA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21999; Mature: 21868

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPSKSALILIEYVNDWLSPSGGIYPSFQDREQVDTAIANSKIALAEARRRGMHVIHAS
CCCCCCCCEEEHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCEEEEEEE
LKFEPQFKVLGEGKYGLRKMMRDYQSFLGEQADFFPGFEPADGEFVVRERGGGSSVFVGT
EEECCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEC
TLDSYLRNNRIFDIYLAGFSLRQCVESSMRNAHDLGYNTNVIYDASAGYTRKQQDDFVAE
CHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHH
IAPFYANAITTQEFVA
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDPSKSALILIEYVNDWLSPSGGIYPSFQDREQVDTAIANSKIALAEARRRGMHVIHAS
CCCCCCCEEEHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCEEEEEEE
LKFEPQFKVLGEGKYGLRKMMRDYQSFLGEQADFFPGFEPADGEFVVRERGGGSSVFVGT
EEECCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEC
TLDSYLRNNRIFDIYLAGFSLRQCVESSMRNAHDLGYNTNVIYDASAGYTRKQQDDFVAE
CHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHH
IAPFYANAITTQEFVA
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA