Click here to switch to the map view.

The map label for this gene is trbD

Identifier: 17547301

GI number: 17547301

Start: 2789834

End: 2790106

Strand: Reverse

Name: trbD

Synonym: RSc2582

Alternate gene names: NA

Gene position: 2790106-2789834 (Counterclockwise)

Preceding gene: 17547302

Following gene: 17547300

Centisome position: 75.08

GC content: 66.67

Gene sequence:

>273_bases
ATGAGCGGGCCGGACAGCTTCGCGGCCGGCTTCGAGGTGCCGCTACATCGCTCGCTCACCGAGCCGATCCTCATGGGCGG
CGCACCGCGCACCGTGGCAATTGCCAACGGTACGCTGGCCGCCGCCGTCGGGCTGGGCCTGCAACTCTGGATTCCCGGTG
TCGTGCTCTGGATCGTCGGTCACTCGATGGCCGTGTGGGGCGCGCGTGTTGATCCGCAGTTCATGCAGGTCTTCGCCCGG
CACATCAAGCACAAGTCGCTGCTGGACGTATAG

Upstream 100 bases:

>100_bases
GCTTCCGCAAGCTGATCCAGATTGTGTTCGGCCTGTCCATCGCGTTCGCGGCTTCGAGCTTCTTCCTGTCGTTCTTCAGC
TTCTCCGGCGGGGCGGTTGT

Downstream 100 bases:

>100_bases
GGGAACGCCGCCATGCTGAACCTTGCCGAATACCGCCAGCGGCCCGCCTTGCTGGCCGACTGGCTTCCTTGGGCCGGGCT
GATCGCACCGGGTGTCGTCT

Product: conjugal transfer TrbD transmembrane protein

Products: NA

Alternate protein names: Conjugal Transfer Protein TrbB; Conjugal Transfer Protein; Conjugal Transfer TrbD Transmembrane Protein; Type IV Secretory Pathway VirB3 Family Protein; Conjugal Transfer Trbd Transmembrane Protein; Type IV Secretory Pathway TrbD Component; Type Iv Secretory Pathway Virb3 Family Protein; Conjugal Transfer Protein Trbd; Type IV Secretory Pathway TrbD Component-Like Protein; Conjugative Transfer Protein TrbD; P-Type Conjugative Transfer Protein TrbD

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MSGPDSFAAGFEVPLHRSLTEPILMGGAPRTVAIANGTLAAAVGLGLQLWIPGVVLWIVGHSMAVWGARVDPQFMQVFAR
HIKHKSLLDV

Sequences:

>Translated_90_residues
MSGPDSFAAGFEVPLHRSLTEPILMGGAPRTVAIANGTLAAAVGLGLQLWIPGVVLWIVGHSMAVWGARVDPQFMQVFAR
HIKHKSLLDV
>Mature_89_residues
SGPDSFAAGFEVPLHRSLTEPILMGGAPRTVAIANGTLAAAVGLGLQLWIPGVVLWIVGHSMAVWGARVDPQFMQVFARH
IKHKSLLDV

Specific function: Unknown

COG id: COG5268

COG function: function code NU; Type IV secretory pathway, TrbD component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9584; Mature: 9453

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPDSFAAGFEVPLHRSLTEPILMGGAPRTVAIANGTLAAAVGLGLQLWIPGVVLWIVG
CCCCCCCCCCCCCCCHHCCCCHHHCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHHHH
HSMAVWGARVDPQFMQVFARHIKHKSLLDV
HHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGPDSFAAGFEVPLHRSLTEPILMGGAPRTVAIANGTLAAAVGLGLQLWIPGVVLWIVG
CCCCCCCCCCCCCCHHCCCCHHHCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHHHH
HSMAVWGARVDPQFMQVFARHIKHKSLLDV
HHHHCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA