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The map label for this gene is trbI [H]

Identifier: 17547294

GI number: 17547294

Start: 2781912

End: 2783189

Strand: Reverse

Name: trbI [H]

Synonym: RSc2575

Alternate gene names: 17547294

Gene position: 2783189-2781912 (Counterclockwise)

Preceding gene: 17547295

Following gene: 17547293

Centisome position: 74.89

GC content: 68.0

Gene sequence:

>1278_bases
ATGAGCCAGGACGACACTCCCGACCTTGCCGCGCCGCAGGCGGGCAAGGTAGCGCCCGAGGCGGTGGCGCTTCGCGCCCA
GCCGCGCCCGGTCACGCGCCTGAACCGGCGCACGCTGGCCATCCTCGCAGGTACCCTGTCGGTCGCCGTGCTTGGCGCGC
TGATGTGGTCACTGCAACCGCAGCGGCGCGGCGCAGGCGAGCAGACCGAGCTTTACAACGTCGAACGCGTCTCGAAGTCA
GAAGGGCTGGACGCGCTGCCGGCGGACTACTCGAAGTTGCCGCCCCCTTTGCCGGCATCCGTGCCGGAGCTGGGGCCGCC
GCTGCCTGGCGATCTTGGACCGGCCATCGTGAAGTCGCATCAGCCGATGACGGCCGCCTATGCGGCCCCCGGCCACGACC
CCAACGATGCGCTGCGCAAGGAAGCCGAAGCGGCGGCGGCATCGTCGGTGTTCTTCCGCTTAGGGTCGCAGGCCGCGCCG
GTGGCGCAGACGCAGGTGGCCGCCGCGCCGGACTTCGCCGCTAATGCGGCGTTCGACCGACTCGCGGCTGGCCCGGCCTC
GACGGCCGCCCAGCCTGCCGACCCGACCGCCGTACAGAACCTGCAAGACCAGAAAGAGGCTTTCCAGAAAGCCGGAAACA
CGGAAACCCGTAATTCCGGCAATCTGACCCTGCCGGCTTCGCCGTATCAGGTCATGGCCGGAACGGTGGTCGCAGGTGCC
TTGGTGACGGGCATCAAGTCGGACTTGCCGGGCGACGTGATCGCCACGGTGACGGAGCCGGTCTATGACACGGCCACCGG
GCGCTTCCTGCTGATTCCGCAGGGTTCGCGCATCCTGGGCAAATACAACAGCCAGGTCAGCTACGGGCAGAGCCGCGTGC
AGGTGGTGTGGAACCGGATCATCCTGCCGGATACGTCTTCGCTCACACTCGACAACCTGGCCGGCACCGACCCTGCCGGC
TATGCCGGGCTGGAAGACGACGTGGACTACCACTGGGGCCGCATCTTCGCCGGGGCGGCGTTGACGACGCTGCTGGGTGT
CGGTGCCGAGCTGGCCGCGCCGGAGAACCGACAGGACGGCAACCGCATCGTCATCGCCGGGCGCGACAGCGCGCAGGACA
GCATCAATCAGGTCGGTCAGGAGATGACCCGGCGCAACATGAACATCCAGCCGACGCTGACCGAACGGCCGGGCCTGCCG
GTTCGCATCATCGTCAACCGCGATCTGGTGCTGCGGCCCTACCAGCCGCTTTTCTTCAACAGGGGGACTTCACGATGA

Upstream 100 bases:

>100_bases
TAGATCGGCTGTTCGGCGCGGCCGAACTGCGCCTGGGTGGCGACAAGGGCGACGTGGTGCGGATCGAGCGCACCGATGGC
GTTGCACGGAGGAACTGACG

Downstream 100 bases:

>100_bases
CGACGCGCAAGCTGCGGCTCGGGCCGCTGCCGAAAACCGAATCCACGAAGCTGACCTTTGCCTGCCCGGCCAGCTTGAAA
GCCGACCTCGACCGCTACGC

Product: conjugal transfer TrbI transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MSQDDTPDLAAPQAGKVAPEAVALRAQPRPVTRLNRRTLAILAGTLSVAVLGALMWSLQPQRRGAGEQTELYNVERVSKS
EGLDALPADYSKLPPPLPASVPELGPPLPGDLGPAIVKSHQPMTAAYAAPGHDPNDALRKEAEAAAASSVFFRLGSQAAP
VAQTQVAAAPDFAANAAFDRLAAGPASTAAQPADPTAVQNLQDQKEAFQKAGNTETRNSGNLTLPASPYQVMAGTVVAGA
LVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLAGTDPAG
YAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQDGNRIVIAGRDSAQDSINQVGQEMTRRNMNIQPTLTERPGLP
VRIIVNRDLVLRPYQPLFFNRGTSR

Sequences:

>Translated_425_residues
MSQDDTPDLAAPQAGKVAPEAVALRAQPRPVTRLNRRTLAILAGTLSVAVLGALMWSLQPQRRGAGEQTELYNVERVSKS
EGLDALPADYSKLPPPLPASVPELGPPLPGDLGPAIVKSHQPMTAAYAAPGHDPNDALRKEAEAAAASSVFFRLGSQAAP
VAQTQVAAAPDFAANAAFDRLAAGPASTAAQPADPTAVQNLQDQKEAFQKAGNTETRNSGNLTLPASPYQVMAGTVVAGA
LVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLAGTDPAG
YAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQDGNRIVIAGRDSAQDSINQVGQEMTRRNMNIQPTLTERPGLP
VRIIVNRDLVLRPYQPLFFNRGTSR
>Mature_424_residues
SQDDTPDLAAPQAGKVAPEAVALRAQPRPVTRLNRRTLAILAGTLSVAVLGALMWSLQPQRRGAGEQTELYNVERVSKSE
GLDALPADYSKLPPPLPASVPELGPPLPGDLGPAIVKSHQPMTAAYAAPGHDPNDALRKEAEAAAASSVFFRLGSQAAPV
AQTQVAAAPDFAANAAFDRLAAGPASTAAQPADPTAVQNLQDQKEAFQKAGNTETRNSGNLTLPASPYQVMAGTVVAGAL
VTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLAGTDPAGY
AGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQDGNRIVIAGRDSAQDSINQVGQEMTRRNMNIQPTLTERPGLPV
RIIVNRDLVLRPYQPLFFNRGTSR

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 44870; Mature: 44739

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQDDTPDLAAPQAGKVAPEAVALRAQPRPVTRLNRRTLAILAGTLSVAVLGALMWSLQP
CCCCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCH
QRRGAGEQTELYNVERVSKSEGLDALPADYSKLPPPLPASVPELGPPLPGDLGPAIVKSH
HHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCC
QPMTAAYAAPGHDPNDALRKEAEAAAASSVFFRLGSQAAPVAQTQVAAAPDFAANAAFDR
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHH
LAAGPASTAAQPADPTAVQNLQDQKEAFQKAGNTETRNSGNLTLPASPYQVMAGTVVAGA
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHH
LVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRI
HHHHHHHCCCCCEEHHHHCCHHHCCCCCEEEEECCCHHHHCCCCCHHHCHHHHHHHHHHE
ILPDTSSLTLDNLAGTDPAGYAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQDG
ECCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCC
NRIVIAGRDSAQDSINQVGQEMTRRNMNIQPTLTERPGLPVRIIVNRDLVLRPYQPLFFN
CEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEECCCCHHEEC
RGTSR
CCCCC
>Mature Secondary Structure 
SQDDTPDLAAPQAGKVAPEAVALRAQPRPVTRLNRRTLAILAGTLSVAVLGALMWSLQP
CCCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCH
QRRGAGEQTELYNVERVSKSEGLDALPADYSKLPPPLPASVPELGPPLPGDLGPAIVKSH
HHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCC
QPMTAAYAAPGHDPNDALRKEAEAAAASSVFFRLGSQAAPVAQTQVAAAPDFAANAAFDR
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHH
LAAGPASTAAQPADPTAVQNLQDQKEAFQKAGNTETRNSGNLTLPASPYQVMAGTVVAGA
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHH
LVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRI
HHHHHHHCCCCCEEHHHHCCHHHCCCCCEEEEECCCHHHHCCCCCHHHCHHHHHHHHHHE
ILPDTSSLTLDNLAGTDPAGYAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQDG
ECCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCC
NRIVIAGRDSAQDSINQVGQEMTRRNMNIQPTLTERPGLPVRIIVNRDLVLRPYQPLFFN
CEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEECCCCHHEEC
RGTSR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]