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The map label for this gene is dedA [H]

Identifier: 17547278

GI number: 17547278

Start: 2767764

End: 2768420

Strand: Reverse

Name: dedA [H]

Synonym: RSc2559

Alternate gene names: 17547278

Gene position: 2768420-2767764 (Counterclockwise)

Preceding gene: 17547293

Following gene: 17547275

Centisome position: 74.49

GC content: 63.17

Gene sequence:

>657_bases
TTGGATATCGTGATGCAACTGATCGACATCGTGCTGCATGTCGACAAATCGCTGGGGATGCTGATCCAGCAATACGGCGC
GTGGGTCTACGTGCTGCTGTTCGCCATCGTGTTTGCCGAAACCGGCCTGGTGGTGCTGCCGTTCCTGCCGGGCGACACGC
TATTGTTCATTGCCGGCGCCATGTGCGCAACCGGCCAGATGGATGCCTGGCTGCTGATCGCCCTGCTGGTGACGGCCGCG
GTCACGGGCAATACGGTCAACTATTTCGTCGGCACCTGGATCGGGCCGAAGGTGTTCGACGGGCATATCCGCTTTCTCGA
CCACGAGGCGTTGCTCAAGACGCACGCCTTCTACGAGCGCCACGGCGGCAAGACACTGGTGATGGCGCGCTTCATTCCGG
TGGTGCGCACGTTCGCGCCGTTCGTGGCCGGCGTGTCGAAGATGACCTTCGCCAAGTTCCAGCTGTTCAACATGATCGGG
GCGGTGCTGTGGGTGGCGATCCTGGTGCTGTCCGGCGAAGCCTTCGGCACCGTGCCGGTGATTCGCGACCACCTGAACAC
CATCGTGCTGATCGGCCTGGGCGCGGCCGTCGTGCCGCTGGTGCTGGGCGGGCTGTGGAAGCTGCTCAAGCGCCGCCGCA
CGGTGGTGCAGAAATAA

Upstream 100 bases:

>100_bases
ATGTCCCCGGCGGCGTCCGCAGGAAACGGCGCATCGCATGCGCCTAGGCGCAACCTAAGCCGCTTCCGGTATCATTCTCG
GCTGCTTTCAGGAGGAGCAC

Downstream 100 bases:

>100_bases
GCCTCAGTTGAGGTTGCGGCTCATGGCGCGCAGCGTCGGCATGCGCTCCTTGAGCTTGGGGGTGTCGGCCGCATCGGGGC
GGGCATCCACATAGGCTTCC

Product: DEDA DSG-1 protein transmembrane

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MDIVMQLIDIVLHVDKSLGMLIQQYGAWVYVLLFAIVFAETGLVVLPFLPGDTLLFIAGAMCATGQMDAWLLIALLVTAA
VTGNTVNYFVGTWIGPKVFDGHIRFLDHEALLKTHAFYERHGGKTLVMARFIPVVRTFAPFVAGVSKMTFAKFQLFNMIG
AVLWVAILVLSGEAFGTVPVIRDHLNTIVLIGLGAAVVPLVLGGLWKLLKRRRTVVQK

Sequences:

>Translated_218_residues
MDIVMQLIDIVLHVDKSLGMLIQQYGAWVYVLLFAIVFAETGLVVLPFLPGDTLLFIAGAMCATGQMDAWLLIALLVTAA
VTGNTVNYFVGTWIGPKVFDGHIRFLDHEALLKTHAFYERHGGKTLVMARFIPVVRTFAPFVAGVSKMTFAKFQLFNMIG
AVLWVAILVLSGEAFGTVPVIRDHLNTIVLIGLGAAVVPLVLGGLWKLLKRRRTVVQK
>Mature_218_residues
MDIVMQLIDIVLHVDKSLGMLIQQYGAWVYVLLFAIVFAETGLVVLPFLPGDTLLFIAGAMCATGQMDAWLLIALLVTAA
VTGNTVNYFVGTWIGPKVFDGHIRFLDHEALLKTHAFYERHGGKTLVMARFIPVVRTFAPFVAGVSKMTFAKFQLFNMIG
AVLWVAILVLSGEAFGTVPVIRDHLNTIVLIGLGAAVVPLVLGGLWKLLKRRRTVVQK

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=202, Percent_Identity=45.5445544554455, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789384, Length=162, Percent_Identity=36.4197530864198, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1789481, Length=162, Percent_Identity=36.4197530864198, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23921; Mature: 23921

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIVMQLIDIVLHVDKSLGMLIQQYGAWVYVLLFAIVFAETGLVVLPFLPGDTLLFIAGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
MCATGQMDAWLLIALLVTAAVTGNTVNYFVGTWIGPKVFDGHIRFLDHEALLKTHAFYER
HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHHH
HGGKTLVMARFIPVVRTFAPFVAGVSKMTFAKFQLFNMIGAVLWVAILVLSGEAFGTVPV
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
IRDHLNTIVLIGLGAAVVPLVLGGLWKLLKRRRTVVQK
HHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDIVMQLIDIVLHVDKSLGMLIQQYGAWVYVLLFAIVFAETGLVVLPFLPGDTLLFIAGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
MCATGQMDAWLLIALLVTAAVTGNTVNYFVGTWIGPKVFDGHIRFLDHEALLKTHAFYER
HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHHH
HGGKTLVMARFIPVVRTFAPFVAGVSKMTFAKFQLFNMIGAVLWVAILVLSGEAFGTVPV
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
IRDHLNTIVLIGLGAAVVPLVLGGLWKLLKRRRTVVQK
HHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]