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The map label for this gene is exbD2 [H]

Identifier: 17547248

GI number: 17547248

Start: 2737705

End: 2738136

Strand: Direct

Name: exbD2 [H]

Synonym: RSc2529

Alternate gene names: 17547248

Gene position: 2737705-2738136 (Clockwise)

Preceding gene: 17547247

Following gene: 17547249

Centisome position: 73.67

GC content: 67.13

Gene sequence:

>432_bases
ATGCGCTTCCGCCCGCGCCATGCCCGCGAAGAGCCGGAGATCAACCTGATCCCGCTGATCGACGTGCTGCTCGTGATCCT
CATCTTCCTGATGATCACGACCACGTATTCCCGTTACACCGAACTGAAGGTCAACCTGCCGACCGCCGACGCGGCGAAGG
CCACCGAGCGCCCAGGCCAGATCGTCGTATCGATCACGGCCAACGGCGTCTATTCGGTCGACAAGCAGGTGCTCGACACC
CGCGACGTGACCAGCCTGTCCGATGCCCTGCGCAGTGCCGCGGGCAGCGGCGGCGGTCCCGAGCCGGTGGTGGTGATCAA
CGCCGACGCGCAGGCCGCGCACCAGGCTGTCGTCAACGTGATGGAAGCCGCCCGCGTGGCCGGCTTGTCGCACCTGACCT
TCGCCACCCAGACCGGCAACGCCGCTCGCTGA

Upstream 100 bases:

>100_bases
GTCGACAGCTACGTGGTCGAACTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGACC
GGCACGCACTGGAGCAAGCC

Downstream 100 bases:

>100_bases
CCCCGCCCGCACCGCATGCCCGTTGCCCAGCACCGCCTAGCCAGCTTCGTCACCCGCCAATGGCAGCGGCGCGGCTGGTT
TGCGCGGATGCTGTGGCCGC

Product: biopolymer transport EXBD-like transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MRFRPRHAREEPEINLIPLIDVLLVILIFLMITTTYSRYTELKVNLPTADAAKATERPGQIVVSITANGVYSVDKQVLDT
RDVTSLSDALRSAAGSGGGPEPVVVINADAQAAHQAVVNVMEAARVAGLSHLTFATQTGNAAR

Sequences:

>Translated_143_residues
MRFRPRHAREEPEINLIPLIDVLLVILIFLMITTTYSRYTELKVNLPTADAAKATERPGQIVVSITANGVYSVDKQVLDT
RDVTSLSDALRSAAGSGGGPEPVVVINADAQAAHQAVVNVMEAARVAGLSHLTFATQTGNAAR
>Mature_143_residues
MRFRPRHAREEPEINLIPLIDVLLVILIFLMITTTYSRYTELKVNLPTADAAKATERPGQIVVSITANGVYSVDKQVLDT
RDVTSLSDALRSAAGSGGGPEPVVVINADAQAAHQAVVNVMEAARVAGLSHLTFATQTGNAAR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15279; Mature: 15279

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFRPRHAREEPEINLIPLIDVLLVILIFLMITTTYSRYTELKVNLPTADAAKATERPGQ
CCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHCCCCCCE
IVVSITANGVYSVDKQVLDTRDVTSLSDALRSAAGSGGGPEPVVVINADAQAAHQAVVNV
EEEEEECCCEEHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHH
MEAARVAGLSHLTFATQTGNAAR
HHHHHHHCCHHHEEEECCCCCCC
>Mature Secondary Structure
MRFRPRHAREEPEINLIPLIDVLLVILIFLMITTTYSRYTELKVNLPTADAAKATERPGQ
CCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHCCCCCCE
IVVSITANGVYSVDKQVLDTRDVTSLSDALRSAAGSGGGPEPVVVINADAQAAHQAVVNV
EEEEEECCCEEHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHH
MEAARVAGLSHLTFATQTGNAAR
HHHHHHHCCHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]