| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yusV [H]
Identifier: 17547117
GI number: 17547117
Start: 2605153
End: 2605992
Strand: Reverse
Name: yusV [H]
Synonym: RSc2398
Alternate gene names: 17547117
Gene position: 2605992-2605153 (Counterclockwise)
Preceding gene: 17547118
Following gene: 17547116
Centisome position: 70.12
GC content: 75.6
Gene sequence:
>840_bases ATGAGCTGGCTGCGCCGCGCCGCCGTCACCGATGCGTTCGCGCAGGCCGCCGACGCGCCCGCGCTGGCGCTGCGCGAGCT GCGCGTGACGATGGGCGGGCGGGTGCTGATCGAGCGGCTGTCGATGTCGGCCGCGGGCGGCGAGCTGTGGTGCGTGGTCG GACCGAACGGCGCGGGCAAGTCGACCCTGCTGGGCGTGCTGGCGGGCCTGCGCGCGCCGGACGGCGGCGCGGTGGCGCTG GATGGCCGTGCGCTGGCGGCGTGGCCCGTTGCGGCGCTGGCCCGGCGCCGTGCCTTCCTGCCGCAGACGCTGCACGACCC GTTCCCGATGACGGCCCATGAGGCGGTGATGACCGGTCGCCATCCGCACCTGGCCCGCTGGGAGTGGGAGGGCGAAGCGG ATGCGCGCGCCGTGGACGCGGCCATCGCCGCGCTGGCGCTGGAGCCGCTTGCGCCGCGCGATGTGCGCACGCTGTCCGGC GGCGAGCGCCAGCGCGTGGCCATGGCCGCGGTGGTGGCGCAGCAGGCGAGCGTGCTGCTGCTCGACGAGCCGCTGGCGCA CCTGGACCTGCATCAGCAGATCGCCGTCCTGCGCCTGCTGCGCGATGGCTGCCGGCGCCAGGGCTGGCTGGTGATCCTGA CCGTGCACGACCTGAACCTGGCCCGGCGCTACGCGACGCACGCGCTGCTGATGGACGGCGAAGGCCATGCCGCCGCCGGT CCGGCCGACGCCGTCCTGACGCCGGAGCACTGCGCGCGCGTGCTGCGCACCCCCATCGCGGCGGTCGATGATGGCCGCCG CATCGCGCTGATTCCCGATGACCCGGACGATGCATCCTGA
Upstream 100 bases:
>100_bases TCGCCCGCACGCTGATCGCGCCGGCGCAGTTGCCGGTGGGGGTGATCACCACGCTGCTGGGCGTGCCGACCTTTCTCTAC CTGCTGATGCGGAGCGCGCG
Downstream 100 bases:
>100_bases CGGCCATGGCCACGGCCTCGCATGCGCGGATGCTACGATCGCGACGCCATCGGCATGCGACGGCGGGCGATTGCGGTGCG CCGTCGGCGCGCATTGACGT
Product: ABC transporter ATP-binding protein
Products: ADP; phosphate; iron (III) hydroxamate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MSWLRRAAVTDAFAQAADAPALALRELRVTMGGRVLIERLSMSAAGGELWCVVGPNGAGKSTLLGVLAGLRAPDGGAVAL DGRALAAWPVAALARRRAFLPQTLHDPFPMTAHEAVMTGRHPHLARWEWEGEADARAVDAAIAALALEPLAPRDVRTLSG GERQRVAMAAVVAQQASVLLLDEPLAHLDLHQQIAVLRLLRDGCRRQGWLVILTVHDLNLARRYATHALLMDGEGHAAAG PADAVLTPEHCARVLRTPIAAVDDGRRIALIPDDPDDAS
Sequences:
>Translated_279_residues MSWLRRAAVTDAFAQAADAPALALRELRVTMGGRVLIERLSMSAAGGELWCVVGPNGAGKSTLLGVLAGLRAPDGGAVAL DGRALAAWPVAALARRRAFLPQTLHDPFPMTAHEAVMTGRHPHLARWEWEGEADARAVDAAIAALALEPLAPRDVRTLSG GERQRVAMAAVVAQQASVLLLDEPLAHLDLHQQIAVLRLLRDGCRRQGWLVILTVHDLNLARRYATHALLMDGEGHAAAG PADAVLTPEHCARVLRTPIAAVDDGRRIALIPDDPDDAS >Mature_278_residues SWLRRAAVTDAFAQAADAPALALRELRVTMGGRVLIERLSMSAAGGELWCVVGPNGAGKSTLLGVLAGLRAPDGGAVALD GRALAAWPVAALARRRAFLPQTLHDPFPMTAHEAVMTGRHPHLARWEWEGEADARAVDAAIAALALEPLAPRDVRTLSGG ERQRVAMAAVVAQQASVLLLDEPLAHLDLHQQIAVLRLLRDGCRRQGWLVILTVHDLNLARRYATHALLMDGEGHAAAGP ADAVLTPEHCARVLRTPIAAVDDGRRIALIPDDPDDAS
Specific function: Provides the ATPase subunit for at least 2 ABC transporter complexes; YfiYZ/YfhA/YusV involved in import of the iron-hydroxamate siderophores schizokinen, arthrobactin and corprogen (Probable), and FeuABC/YusV involved in import of the catecholate siderop
COG id: COG1120
COG function: function code PH; ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI46592956, Length=190, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI46592978, Length=190, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI46592898, Length=190, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI46592915, Length=191, Percent_Identity=31.413612565445, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI46592964, Length=191, Percent_Identity=31.413612565445, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI46592971, Length=190, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9665248, Length=221, Percent_Identity=28.5067873303167, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI108773784, Length=190, Percent_Identity=27.3684210526316, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI108773782, Length=190, Percent_Identity=27.3684210526316, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI116734710, Length=230, Percent_Identity=26.9565217391304, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1786345, Length=240, Percent_Identity=37.5, Blast_Score=147, Evalue=5e-37, Organism=Escherichia coli, GI1786803, Length=243, Percent_Identity=36.6255144032922, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1790739, Length=229, Percent_Identity=37.117903930131, Blast_Score=138, Evalue=5e-34, Organism=Escherichia coli, GI1788002, Length=237, Percent_Identity=36.2869198312236, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI87081834, Length=202, Percent_Identity=34.1584158415842, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI87081791, Length=223, Percent_Identity=30.4932735426009, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787370, Length=235, Percent_Identity=29.3617021276596, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1790544, Length=191, Percent_Identity=34.0314136125654, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788225, Length=242, Percent_Identity=29.7520661157025, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788450, Length=221, Percent_Identity=31.2217194570136, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786253, Length=199, Percent_Identity=31.1557788944724, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789873, Length=217, Percent_Identity=32.258064516129, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI87081709, Length=235, Percent_Identity=26.8085106382979, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788210, Length=204, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789593, Length=236, Percent_Identity=28.3898305084746, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787029, Length=213, Percent_Identity=28.6384976525822, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786398, Length=199, Percent_Identity=28.1407035175879, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789864, Length=214, Percent_Identity=25.7009345794392, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788165, Length=233, Percent_Identity=27.4678111587983, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789891, Length=205, Percent_Identity=29.2682926829268, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87082267, Length=222, Percent_Identity=31.5315315315315, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786703, Length=216, Percent_Identity=34.2592592592593, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786319, Length=200, Percent_Identity=29.5, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787712, Length=234, Percent_Identity=28.2051282051282, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1786698, Length=208, Percent_Identity=26.4423076923077, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790467, Length=205, Percent_Identity=29.2682926829268, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788761, Length=226, Percent_Identity=27.4336283185841, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI87082268, Length=229, Percent_Identity=27.5109170305677, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790162, Length=222, Percent_Identity=26.5765765765766, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789032, Length=227, Percent_Identity=29.9559471365639, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787500, Length=218, Percent_Identity=27.5229357798165, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787105, Length=234, Percent_Identity=30.3418803418803, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789751, Length=212, Percent_Identity=30.188679245283, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1789962, Length=239, Percent_Identity=26.7782426778243, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788506, Length=234, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787758, Length=242, Percent_Identity=26.4462809917355, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787143, Length=194, Percent_Identity=27.319587628866, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787182, Length=219, Percent_Identity=26.027397260274, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1786872, Length=196, Percent_Identity=27.0408163265306, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI48995001, Length=195, Percent_Identity=27.6923076923077, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1789586, Length=222, Percent_Identity=23.8738738738739, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI87081782, Length=146, Percent_Identity=31.5068493150685, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17555800, Length=190, Percent_Identity=25.2631578947368, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115533592, Length=194, Percent_Identity=29.3814432989691, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17539902, Length=263, Percent_Identity=26.615969581749, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17552010, Length=193, Percent_Identity=26.9430051813472, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320296, Length=257, Percent_Identity=25.2918287937743, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6323959, Length=191, Percent_Identity=29.3193717277487, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI85816269, Length=198, Percent_Identity=28.2828282828283, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24580553, Length=198, Percent_Identity=28.2828282828283, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI85724864, Length=198, Percent_Identity=28.2828282828283, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24580555, Length=198, Percent_Identity=28.2828282828283, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI17647219, Length=184, Percent_Identity=30.9782608695652, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI45552805, Length=184, Percent_Identity=30.9782608695652, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17136592, Length=223, Percent_Identity=33.1838565022422, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI161076682, Length=189, Percent_Identity=26.984126984127, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24582014, Length=213, Percent_Identity=23.943661971831, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24582012, Length=213, Percent_Identity=23.943661971831, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI161076684, Length=188, Percent_Identity=27.1276595744681, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24581617, Length=188, Percent_Identity=27.1276595744681, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24581615, Length=188, Percent_Identity=27.1276595744681, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24659289, Length=184, Percent_Identity=30.9782608695652, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24661270, Length=193, Percent_Identity=25.9067357512953, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI21355589, Length=193, Percent_Identity=25.9067357512953, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI28573573, Length=215, Percent_Identity=26.9767441860465, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI28573571, Length=215, Percent_Identity=26.9767441860465, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI45552199, Length=234, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24581407, Length=234, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 29673; Mature: 29541
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWLRRAAVTDAFAQAADAPALALRELRVTMGGRVLIERLSMSAAGGELWCVVGPNGAGK CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCH STLLGVLAGLRAPDGGAVALDGRALAAWPVAALARRRAFLPQTLHDPFPMTAHEAVMTGR HHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCC HPHLARWEWEGEADARAVDAAIAALALEPLAPRDVRTLSGGERQRVAMAAVVAQQASVLL CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCEEE LDEPLAHLDLHQQIAVLRLLRDGCRRQGWLVILTVHDLNLARRYATHALLMDGEGHAAAG ECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHEEEEECCCCCCCCC PADAVLTPEHCARVLRTPIAAVDDGRRIALIPDDPDDAS CCCCCCCHHHHHHHHHCCHHCCCCCCEEEECCCCCCCCC >Mature Secondary Structure SWLRRAAVTDAFAQAADAPALALRELRVTMGGRVLIERLSMSAAGGELWCVVGPNGAGK CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCH STLLGVLAGLRAPDGGAVALDGRALAAWPVAALARRRAFLPQTLHDPFPMTAHEAVMTGR HHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCC HPHLARWEWEGEADARAVDAAIAALALEPLAPRDVRTLSGGERQRVAMAAVVAQQASVLL CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCEEE LDEPLAHLDLHQQIAVLRLLRDGCRRQGWLVILTVHDLNLARRYATHALLMDGEGHAAAG ECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHEEEEECCCCCCCCC PADAVLTPEHCARVLRTPIAAVDDGRRIALIPDDPDDAS CCCCCCCHHHHHHHHHCCHHCCCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; iron (III) hydroxamate [Periplasm]; H2O [C]
Specific reaction: ATP + iron (III) hydroxamate [Periplasm] + H2O = ADP + phosphate + iron (III) hydroxamate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]