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The map label for this gene is yiaD [H]

Identifier: 17547099

GI number: 17547099

Start: 2584311

End: 2584940

Strand: Direct

Name: yiaD [H]

Synonym: RSc2380

Alternate gene names: 17547099

Gene position: 2584311-2584940 (Clockwise)

Preceding gene: 17547082

Following gene: 17547100

Centisome position: 69.54

GC content: 68.73

Gene sequence:

>630_bases
ATGAAAGCCAAGCTTATTTCCGTCTCGCTGGTCGCGCTGCTGGCCGCCGGCTGTGCCACCGAACAGCAGAACCAGACCCT
GGCGGGCACGGGCGTGGGCGCCGCCGTGGGTGCCGGCATCGGCGCGCTGGTCGGCAACAGCAAGGGCGCGGCCATCGGCG
GCGCGCTGGGCGCGGCCGGCGGCGCGGCCGTCGGCTACAACTGGAACGCGATCAAGTCCAAGCTGACCGGCGACACGGCC
GGCACCGGCACGCAGATCTCCGAGCAGCCGGACGGCTCGCTCAAGCTGAACATCCCGAGCCAGGTCTCGTTCGATACCGA
CAGCGCCGTGATCAAGCCGTCTTTCCGCGGCCCGCTGGACAGCGTGGCGGAAACCCTGAGCCAGCATCCTGAACTGGCCG
CCAACGTGGTCGGCCACACCGACAGCACCGGCAACCCGAACTACAACATGAGCCTGTCGCAGCGCCGGGCCCAGAGCGTG
GCCAGCTACCTGACCGACCGCGGCGTGGCCCGCAACCGCATGTCGGCCGAGGGCCGCGGCCAAACGCAGCCGGTCGGGGA
CAACGCCACCGAGGCCGGCCGCGCACAAAATCGCCGCGTCGAAATTTATTTGAAACCAATTCAGGGATGA

Upstream 100 bases:

>100_bases
ATTTTGCCGGCGCGGCTTCTGTTTGATTCCCCCGTATCCCTTGTCCGCGCCGGATATCGGCAAACAACGACAACCGATCC
CGTTAGCACAAGGAGAATTC

Downstream 100 bases:

>100_bases
CCCGGTCATAGAGAACGGGTGCCGCTTGCCACACGTTGCTGGCTCGCGATGCGTGGCTGACCTCCCGGGCGGCGCCTGAT
TTCTCCTCCTTTTCCGTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MKAKLISVSLVALLAAGCATEQQNQTLAGTGVGAAVGAGIGALVGNSKGAAIGGALGAAGGAAVGYNWNAIKSKLTGDTA
GTGTQISEQPDGSLKLNIPSQVSFDTDSAVIKPSFRGPLDSVAETLSQHPELAANVVGHTDSTGNPNYNMSLSQRRAQSV
ASYLTDRGVARNRMSAEGRGQTQPVGDNATEAGRAQNRRVEIYLKPIQG

Sequences:

>Translated_209_residues
MKAKLISVSLVALLAAGCATEQQNQTLAGTGVGAAVGAGIGALVGNSKGAAIGGALGAAGGAAVGYNWNAIKSKLTGDTA
GTGTQISEQPDGSLKLNIPSQVSFDTDSAVIKPSFRGPLDSVAETLSQHPELAANVVGHTDSTGNPNYNMSLSQRRAQSV
ASYLTDRGVARNRMSAEGRGQTQPVGDNATEAGRAQNRRVEIYLKPIQG
>Mature_209_residues
MKAKLISVSLVALLAAGCATEQQNQTLAGTGVGAAVGAGIGALVGNSKGAAIGGALGAAGGAAVGYNWNAIKSKLTGDTA
GTGTQISEQPDGSLKLNIPSQVSFDTDSAVIKPSFRGPLDSVAETLSQHPELAANVVGHTDSTGNPNYNMSLSQRRAQSV
ASYLTDRGVARNRMSAEGRGQTQPVGDNATEAGRAQNRRVEIYLKPIQG

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=220, Percent_Identity=42.2727272727273, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1787191, Length=124, Percent_Identity=36.2903225806452, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786962, Length=103, Percent_Identity=37.8640776699029, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21175; Mature: 21175

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKLISVSLVALLAAGCATEQQNQTLAGTGVGAAVGAGIGALVGNSKGAAIGGALGAAG
CCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHCCHHHEECCCCCCCCCCHHCCCC
GAAVGYNWNAIKSKLTGDTAGTGTQISEQPDGSLKLNIPSQVSFDTDSAVIKPSFRGPLD
CCEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCHH
SVAETLSQHPELAANVVGHTDSTGNPNYNMSLSQRRAQSVASYLTDRGVARNRMSAEGRG
HHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCC
QTQPVGDNATEAGRAQNRRVEIYLKPIQG
CCCCCCCCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MKAKLISVSLVALLAAGCATEQQNQTLAGTGVGAAVGAGIGALVGNSKGAAIGGALGAAG
CCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHCCHHHEECCCCCCCCCCHHCCCC
GAAVGYNWNAIKSKLTGDTAGTGTQISEQPDGSLKLNIPSQVSFDTDSAVIKPSFRGPLD
CCEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCHH
SVAETLSQHPELAANVVGHTDSTGNPNYNMSLSQRRAQSVASYLTDRGVARNRMSAEGRG
HHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCC
QTQPVGDNATEAGRAQNRRVEIYLKPIQG
CCCCCCCCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]