| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17547067
Identifier: 17547067
GI number: 17547067
Start: 2546505
End: 2547731
Strand: Direct
Name: 17547067
Synonym: RSc2348
Alternate gene names: NA
Gene position: 2546505-2547731 (Clockwise)
Preceding gene: 17547063
Following gene: 17547069
Centisome position: 68.52
GC content: 67.89
Gene sequence:
>1227_bases ATGACCTCCCGCCCTCTCGTTCCCGAGCCCGAAACCCGCGCCGGATCGCGGCATTATCGCACGCGGCTGGTGGCCGATCT GCCCGAGATCGGACGCGCCGCGTGGGACGATCTGCTCGCACGGCAACCCGATGCCACGCCCTTCCTGCGCTTCGATTTCC TGCACGCGCTGCATGCCAGCGGCAGCGCCTGCGCCGAGACCGGCTGGTCGCCGCAGTACCTGACCCTGTGGGAAAGCGCC CCGGACGGCTGCGGAGGTGACGTCCTGGCCGCGGCCATGCCGCTCTATGTGAAGAGCCATTCGTACGGCGAATACGTGTT CGACTGGGCGTGGGCCAATGCGTATGCGCAGCATGGGCTGGCGTATTACCCGAAGTGGCTGTCCGCCGTGCCGTTCACGC CGGTGCAGGGTGCGCGGCTGCTGGCGCGCGATGCGACGGCCCGCGCCGCGCTGCTCGAGACCGCGCTGGCCATGGCGCGG CAGAGCGGGCTATCGTCGCTGCATGTGCTGTTTCCCGGCCCCGACGAAGCCGGGCTGATGCGCGATGCCGGCATGCTGCT GCGGCAAGGCGTGCAGTTCCACTGGTGCAACAGCGGCTTCGCCAGCTTCGATGGCTTCCTGGCCGCGCTGGAGCAGAAGA AGCGCAAGAACATCCGCGCCGAACGCCGCCGCGTGCACAGCGCGGGCATCACCTTCCGCCACGTGCCCGGCGCCGCGGCC ACCGAGGCCGACTGGCGCTTCTTCCACCGCTGCTATCGGGCCACCTACCGCGAACACCATTCGTCGCCCTACCTGAACCT CGACTTCTTCCTGCGGATCGGCCAGGCGATGCCCGAGAACCTGCTGCTGGTGGTCGCCATGCGCGAGGGCCGCGACATCG CCACCGCGTTGCTGGTGATCGATCCGCGCCCCGAGGCCTCGGTGATGTACGGCCGCTACTGGGGCGCGATCGAACATCAC CCATGCCTGCACTTCGAGACGGCGTACTACCAGCCGCTGTCGTACTGCATCGAGCACGGCATCCGCACCTTCGAAGGCGG CGCCCAGGGCGAACACAAGATGGCCCGCGGTTTCGAGCCGGTGGCCACGCAGTCGGCGCACTGGCTGGCCCATCCGGCAT TCGCGGATGCGGTCGGCCGTTTTCTTGACCATGAAACGGCCGGCATGGAAGCGTATCTGGATGAACTGACAGACCGTTCA CCGTTCCGGCAACGATCGGGAGAATGA
Upstream 100 bases:
>100_bases GCCGACGGTGCAGTTGATCTGGGCAAGAGCGACGAGAACGGTCATGGAAGGCGATGTCGGAGCGGGCACGGCGTCCCGGG CAGGAATTAGAATCGGCGGC
Downstream 100 bases:
>100_bases GAGGTGCTTGGGGGAATCTGCCCTGGCAGCGATCGGCCGGGGCGGCGGGAACCACGACCGCACCCGGGGCGGGCACGGCC GGCAGCCACTATCGCGTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 408; Mature: 407
Protein sequence:
>408_residues MTSRPLVPEPETRAGSRHYRTRLVADLPEIGRAAWDDLLARQPDATPFLRFDFLHALHASGSACAETGWSPQYLTLWESA PDGCGGDVLAAAMPLYVKSHSYGEYVFDWAWANAYAQHGLAYYPKWLSAVPFTPVQGARLLARDATARAALLETALAMAR QSGLSSLHVLFPGPDEAGLMRDAGMLLRQGVQFHWCNSGFASFDGFLAALEQKKRKNIRAERRRVHSAGITFRHVPGAAA TEADWRFFHRCYRATYREHHSSPYLNLDFFLRIGQAMPENLLLVVAMREGRDIATALLVIDPRPEASVMYGRYWGAIEHH PCLHFETAYYQPLSYCIEHGIRTFEGGAQGEHKMARGFEPVATQSAHWLAHPAFADAVGRFLDHETAGMEAYLDELTDRS PFRQRSGE
Sequences:
>Translated_408_residues MTSRPLVPEPETRAGSRHYRTRLVADLPEIGRAAWDDLLARQPDATPFLRFDFLHALHASGSACAETGWSPQYLTLWESA PDGCGGDVLAAAMPLYVKSHSYGEYVFDWAWANAYAQHGLAYYPKWLSAVPFTPVQGARLLARDATARAALLETALAMAR QSGLSSLHVLFPGPDEAGLMRDAGMLLRQGVQFHWCNSGFASFDGFLAALEQKKRKNIRAERRRVHSAGITFRHVPGAAA TEADWRFFHRCYRATYREHHSSPYLNLDFFLRIGQAMPENLLLVVAMREGRDIATALLVIDPRPEASVMYGRYWGAIEHH PCLHFETAYYQPLSYCIEHGIRTFEGGAQGEHKMARGFEPVATQSAHWLAHPAFADAVGRFLDHETAGMEAYLDELTDRS PFRQRSGE >Mature_407_residues TSRPLVPEPETRAGSRHYRTRLVADLPEIGRAAWDDLLARQPDATPFLRFDFLHALHASGSACAETGWSPQYLTLWESAP DGCGGDVLAAAMPLYVKSHSYGEYVFDWAWANAYAQHGLAYYPKWLSAVPFTPVQGARLLARDATARAALLETALAMARQ SGLSSLHVLFPGPDEAGLMRDAGMLLRQGVQFHWCNSGFASFDGFLAALEQKKRKNIRAERRRVHSAGITFRHVPGAAAT EADWRFFHRCYRATYREHHSSPYLNLDFFLRIGQAMPENLLLVVAMREGRDIATALLVIDPRPEASVMYGRYWGAIEHHP CLHFETAYYQPLSYCIEHGIRTFEGGAQGEHKMARGFEPVATQSAHWLAHPAFADAVGRFLDHETAGMEAYLDELTDRSP FRQRSGE
Specific function: Unknown
COG id: COG3146
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45721; Mature: 45590
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRPLVPEPETRAGSRHYRTRLVADLPEIGRAAWDDLLARQPDATPFLRFDFLHALHAS CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC GSACAETGWSPQYLTLWESAPDGCGGDVLAAAMPLYVKSHSYGEYVFDWAWANAYAQHGL CCHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCC AYYPKWLSAVPFTPVQGARLLARDATARAALLETALAMARQSGLSSLHVLFPGPDEAGLM HHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH RDAGMLLRQGVQFHWCNSGFASFDGFLAALEQKKRKNIRAERRRVHSAGITFRHVPGAAA HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC TEADWRFFHRCYRATYREHHSSPYLNLDFFLRIGQAMPENLLLVVAMREGRDIATALLVI CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEE DPRPEASVMYGRYWGAIEHHPCLHFETAYYQPLSYCIEHGIRTFEGGAQGEHKMARGFEP CCCCCCCEEEHHHCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCC VATQSAHWLAHPAFADAVGRFLDHETAGMEAYLDELTDRSPFRQRSGE HHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC >Mature Secondary Structure TSRPLVPEPETRAGSRHYRTRLVADLPEIGRAAWDDLLARQPDATPFLRFDFLHALHAS CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC GSACAETGWSPQYLTLWESAPDGCGGDVLAAAMPLYVKSHSYGEYVFDWAWANAYAQHGL CCHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCC AYYPKWLSAVPFTPVQGARLLARDATARAALLETALAMARQSGLSSLHVLFPGPDEAGLM HHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH RDAGMLLRQGVQFHWCNSGFASFDGFLAALEQKKRKNIRAERRRVHSAGITFRHVPGAAA HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC TEADWRFFHRCYRATYREHHSSPYLNLDFFLRIGQAMPENLLLVVAMREGRDIATALLVI CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEE DPRPEASVMYGRYWGAIEHHPCLHFETAYYQPLSYCIEHGIRTFEGGAQGEHKMARGFEP CCCCCCCEEEHHHCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCC VATQSAHWLAHPAFADAVGRFLDHETAGMEAYLDELTDRSPFRQRSGE HHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA